Model-Free Reconstruction of Excitatory Neuronal Connectivity from Calcium Imaging Signals

Olav Stetter; Demian Battaglia; Jordi Soriano; Theo Geisel

doi:10.1371/journal.pcbi.1002653

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Open Access

Peer-reviewed

Research Article

Model-Free Reconstruction of Excitatory Neuronal Connectivity from Calcium Imaging Signals

Olav Stetter,

Affiliations Max Planck Institute for Dynamics and Self-Organization, Göttingen, Germany, Georg August University, Physics Department, Göttingen, Germany, Bernstein Center for Computational Neuroscience, Göttingen, Germany
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Demian Battaglia ,

* E-mail: demian@nld.ds.mpg.de

Affiliations Max Planck Institute for Dynamics and Self-Organization, Göttingen, Germany, Bernstein Center for Computational Neuroscience, Göttingen, Germany
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Jordi Soriano,

Affiliation Departament d'ECM , Facultat de F?sica, Universitat de Barcelona, Barcelona, Spain
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Theo Geisel

Affiliations Max Planck Institute for Dynamics and Self-Organization, Göttingen, Germany, Georg August University, Physics Department, Göttingen, Germany, Bernstein Center for Computational Neuroscience, Göttingen, Germany
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Model-Free Reconstruction of Excitatory Neuronal Connectivity from Calcium Imaging Signals

Olav Stetter,
Demian Battaglia,
Jordi Soriano,
Theo Geisel

Published: August 23, 2012
https://doi.org/10.1371/journal.pcbi.1002653

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Transfer entropy source code available

Posted by OlavStetter on 11 Sep 2012 at 13:22 GMT

As noted in the Methods section, the complete source code is available at:
http://www.network-recons...

If you are interested in reproducing the results of the present paper, you might want to use exactly the version that we used at that time, which is available under the branch named "1.0" in the GitHub repository:
https://github.com/olavol...

Competing interests declared: I am the first author of this paper.

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Model-Free Reconstruction of Excitatory Neuronal Connectivity from Calcium Imaging Signals

Model-Free Reconstruction of Excitatory Neuronal Connectivity from Calcium Imaging Signals

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Transfer entropy source code available

Posted by OlavStetter on 11 Sep 2012 at 13:22 GMT