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Research Article

The GAAS Metagenomic Tool and Its Estimations of Viral and Microbial Average Genome Size in Four Major Biomes

  • Florent E. Angly mail,

    forent.angly@gmail.com

    Affiliations: Biology Department, San Diego State University, San Diego, California, United States of America, Computational Science Research Center, San Diego State University, San Diego, California, United States of America

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  • Dana Willner,

    Affiliation: Biology Department, San Diego State University, San Diego, California, United States of America

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  • Alejandra Prieto-Davó,

    Affiliation: Biology Department, San Diego State University, San Diego, California, United States of America

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  • Robert A. Edwards,

    Affiliations: Biology Department, San Diego State University, San Diego, California, United States of America, Computer Science Department, San Diego State University, San Diego, California, United States of America, Mathematics and Computer Science Division, Argonne National Lab, Argonne, Illinois, United States of America

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  • Robert Schmieder,

    Affiliations: Computational Science Research Center, San Diego State University, San Diego, California, United States of America, Computer Science Department, San Diego State University, San Diego, California, United States of America

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  • Rebecca Vega-Thurber,

    Affiliation: Biology Department, Florida International University, Miami, Florida, United States of America

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  • Dionysios A. Antonopoulos,

    Affiliation: Biosciences Division, Argonne National Laboratory, Argonne, Illinois, United States of America

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  • Katie Barott,

    Affiliation: Biology Department, San Diego State University, San Diego, California, United States of America

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  • Matthew T. Cottrell,

    Affiliation: School of Marine Science and Policy, University of Delaware, Lewes, Delaware, United States of America

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  • Christelle Desnues,

    Affiliation: URMITE, Centre National de la Recherche Scientifique UMR IRD 6236, Université de la Méditerranée, Marseille, France

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  • Elizabeth A. Dinsdale,

    Affiliation: Biology Department, San Diego State University, San Diego, California, United States of America

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  • Mike Furlan,

    Affiliation: Biology Department, San Diego State University, San Diego, California, United States of America

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  • Matthew Haynes,

    Affiliation: Biology Department, San Diego State University, San Diego, California, United States of America

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  • Matthew R. Henn,

    Affiliation: The Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, Massachusetts, United States of America

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  • Yongfei Hu,

    Affiliation: CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China

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  • David L. Kirchman,

    Affiliation: School of Marine Science and Policy, University of Delaware, Lewes, Delaware, United States of America

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  • Tracey McDole,

    Affiliation: Biology Department, San Diego State University, San Diego, California, United States of America

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  • John D. McPherson,

    Affiliation: Ontario Institute for Cancer Research, MaRS Centre, Toronto, Ontario, Canada

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  • Folker Meyer,

    Affiliation: Mathematics and Computer Science Division, Argonne National Lab, Argonne, Illinois, United States of America

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  • R. Michael Miller,

    Affiliation: Biosciences Division, Argonne National Laboratory, Argonne, Illinois, United States of America

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  • Egbert Mundt,

    Affiliation: Poultry Diagnostic and Research Center, College of Veterinary Medicine, The University of Georgia, Athens, Georgia, United States of America

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  • Robert K. Naviaux,

    Affiliation: School of Medicine, University of California San Diego, San Diego, United States of America

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  • Beltran Rodriguez-Mueller,

    Affiliations: Biology Department, San Diego State University, San Diego, California, United States of America, Computational Science Research Center, San Diego State University, San Diego, California, United States of America

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  • Rick Stevens,

    Affiliation: Mathematics and Computer Science Division, Argonne National Lab, Argonne, Illinois, United States of America

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  • Linda Wegley,

    Affiliation: Biology Department, San Diego State University, San Diego, California, United States of America

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  • Lixin Zhang,

    Affiliation: CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China

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  • Baoli Zhu,

    Affiliation: CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China

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  • Forest Rohwer

    Affiliation: Biology Department, San Diego State University, San Diego, California, United States of America

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  • Published: December 11, 2009
  • DOI: 10.1371/journal.pcbi.1000593

Reader Comments (2)

Post a new comment on this article

Publisher's Note: Unavailable GAAS data

Posted by lmrodriguezr on 05 Mar 2013 at 23:53 GMT

No competing interests declared.

RE: Unavailable GAAS data

floflooo replied to lmrodriguezr on 12 Mar 2013 at 05:11 GMT

The data has been updated and is now hosted on a more reliable server: http://sourceforge.net/pr...

No competing interests declared.