Accelerated Profile HMM Searches

Open Access

Peer-reviewed

Research Article

Reader Comments

In the model of Fig. 1a, a delete state D1 and transition B->D1 has been omitted.

No competing interests declared.

In local alignment as described by the paper, there is no transition possible to D1; it is omitted by design.

No competing interests declared.

Sequence alignment
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BLAST algorithm
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Hidden Markov models
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Database searching
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Multiple alignment calculation
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Computer software
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Computational pipelines
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Heuristic alignment procedure
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