Query-Dependent Banding (QDB) for Faster RNA Similarity Searches

Open Access

Peer-reviewed

Research Article

Eric P Nawrocki,

Affiliation Howard Hughes Medical Institute, Janelia Farm Research Campus, Ashburn, Virginia, United States of America
⨯
Sean R Eddy

*To whom correspondence should be addressed. E-mail: eddys@janelia.hhmi.org

Affiliation Howard Hughes Medical Institute, Janelia Farm Research Campus, Ashburn, Virginia, United States of America
⨯

About the Authors

Eric P Nawrocki

Affiliation Howard Hughes Medical Institute, Janelia Farm Research Campus, Ashburn, Virginia, United States of America

Sean R Eddy

*To whom correspondence should be addressed. E-mail: eddys@janelia.hhmi.org

Affiliation Howard Hughes Medical Institute, Janelia Farm Research Campus, Ashburn, Virginia, United States of America

The authors have declared that no competing interests exist.

Both authors contributed to all aspects of this work.

Sequence alignment
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RNA alignment
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Database searching
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RNA structure
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Sequence similarity searching
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Algorithms
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Multiple alignment calculation
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Entropy
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