A Computational Pipeline for High- Throughput Discovery of cis-Regulatory Noncoding RNA in Prokaryotes

• Zizhen Yao ,

  *To whom correspondence should be addressed. E-mail: yzizhen@cs.washington.edu

  Affiliation Department of Computer Science and Engineering, University of Washington, Seattle, Washington, United States of America

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• Jeffrey Barrick,

  ¤ Current address: Department of Microbiology and Molecular Genetics, Michigan State University, East Lansing, Michigan, United States of America

  Affiliation Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut, United States of America

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• Zasha Weinberg,

  Affiliation Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, Connecticut, United States of America

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• Shane Neph,

  Affiliations Department of Computer Science and Engineering, University of Washington, Seattle, Washington, United States of America , Department of Genome Sciences, University of Washington, Seattle, Washington, United States of America

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• Ronald Breaker,

  Affiliations Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut, United States of America , Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, Connecticut, United States of America , Howard Hughes Medical Institute, Yale University, New Haven, Connecticut, United States of America

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• Martin Tompa,

  Affiliations Department of Computer Science and Engineering, University of Washington, Seattle, Washington, United States of America , Department of Genome Sciences, University of Washington, Seattle, Washington, United States of America

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• Walter L Ruzzo

  Affiliations Department of Computer Science and Engineering, University of Washington, Seattle, Washington, United States of America , Department of Genome Sciences, University of Washington, Seattle, Washington, United States of America

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