MORPH: Probabilistic Alignment Combined with Hidden Markov Models of cis-Regulatory Modules

Open Access

Peer-reviewed

Research Article

Saurabh Sinha ,

*To whom correspondence should be addressed. E-mail: sinhas@cs.uiuc.edu

Affiliation Department of Computer Science, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America
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Xin He

Affiliation Department of Computer Science, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America
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Sequence alignment
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Drosophila melanogaster
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Sequence motif analysis
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Multiple alignment calculation
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Transcription factors
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Binding analysis
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Algorithms
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Tandem repeats
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