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Improving Breast Cancer Survival Analysis through Competition-Based Multidimensional Modeling

  • Erhan Bilal ,

    These first authors contributed equally to this paper, and are listed alphabetically.

    Affiliation IBM TJ Watson Research, Yorktown Heights, New York, United States of America

  • Janusz Dutkowski ,

    These first authors contributed equally to this paper, and are listed alphabetically.

    Affiliation Departments of Medicine and Bioengineering, University of California San Diego, La Jolla, California, United States of America

  • Justin Guinney ,

    These first authors contributed equally to this paper, and are listed alphabetically.

    Affiliation Sage Bionetworks, Seattle, Washington, United States of America

  • In Sock Jang ,

    These first authors contributed equally to this paper, and are listed alphabetically.

    Affiliation Sage Bionetworks, Seattle, Washington, United States of America

  • Benjamin A. Logsdon ,

    These first authors contributed equally to this paper, and are listed alphabetically.

    Affiliations Sage Bionetworks, Seattle, Washington, United States of America, Division of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America

  • Gaurav Pandey ,

    These first authors contributed equally to this paper, and are listed alphabetically.

    Affiliations Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, New York, United States of America, Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York, New York, United States of America

  • Benjamin A. Sauerwine ,

    These first authors contributed equally to this paper, and are listed alphabetically.

    Affiliation Sage Bionetworks, Seattle, Washington, United States of America

  • Yishai Shimoni ,

    These first authors contributed equally to this paper, and are listed alphabetically.

    Affiliations Columbia Initiative in Systems Biology, Columbia University, New York, New York, United States of America, Center for Computational Biology and Bioinformatics, Columbia University, New York, New York, United States of America

  • Hans Kristian Moen Vollan ,

    These first authors contributed equally to this paper, and are listed alphabetically.

    Affiliations Department of Genetics, Institute for Cancer Research, Oslo University Hospital, Oslo, Norway, The K. G. Jebsen Center for Breast Cancer Research, Institute for Clinical Medicine, Faculty of Medicine, University of Oslo, Oslo, Norway, Cambridge Research Institute, Cancer Research UK, Cambridge, United Kingdom, Department of Oncology, University of Cambridge, Cambridge, United Kingdom, Department of Oncology, Division of Cancer Medicine, Surgery and Transplantation, Oslo University Hospital, Oslo, Norway

  • Brigham H. Mecham,

    Affiliation Sage Bionetworks, Seattle, Washington, United States of America

  • Oscar M. Rueda,

    Affiliations Cambridge Research Institute, Cancer Research UK, Cambridge, United Kingdom, Department of Oncology, University of Cambridge, Cambridge, United Kingdom

  • Jorg Tost,

    Affiliation Laboratory for Epigenetics and Environment, Centre National de Génotypage, CEA, Institut de Génomique, Evry, France

  • Christina Curtis,

    Affiliation Department of Preventive Medicine, Keck School of Medicine, University of Southern California, Los Angeles, California, United States of America

  • Mariano J. Alvarez,

    Affiliations Columbia Initiative in Systems Biology, Columbia University, New York, New York, United States of America, Center for Computational Biology and Bioinformatics, Columbia University, New York, New York, United States of America

  • Vessela N. Kristensen,

    Affiliations Department of Genetics, Institute for Cancer Research, Oslo University Hospital, Oslo, Norway, The K. G. Jebsen Center for Breast Cancer Research, Institute for Clinical Medicine, Faculty of Medicine, University of Oslo, Oslo, Norway, Department of Clinical Molecular Biology, Division of Medicine, Akershus University Hospital, Ahus, Norway

  • Samuel Aparicio,

    Affiliations Department of Pathology and Laboratory Medicine, University of British Colombia, Vancouver, British Colombia, Canada, Molecular Oncology, British Colombia Cancer Research Center, Vancouver, British Colombia, Canada

  • Anne-Lise Børresen-Dale,

    Affiliations Department of Genetics, Institute for Cancer Research, Oslo University Hospital, Oslo, Norway, The K. G. Jebsen Center for Breast Cancer Research, Institute for Clinical Medicine, Faculty of Medicine, University of Oslo, Oslo, Norway

  • Carlos Caldas,

    Affiliations Cambridge Research Institute, Cancer Research UK, Cambridge, United Kingdom, Department of Oncology, University of Cambridge, Cambridge, United Kingdom, Cambridge Experimental Cancer Medicine Centre, Cambridge, United Kingdom, Cambridge Breast Unit, Cambridge University Hospital NHS Foundation Trust and NIHR Cambridge Biomedical Research Centre, Addenbrooke's Hospital, Cambridge, United Kingdom

  • Andrea Califano ,

    ‡ These senior authors contributed equally to this paper.

    Affiliations Columbia Initiative in Systems Biology, Columbia University, New York, New York, United States of America, Center for Computational Biology and Bioinformatics, Columbia University, New York, New York, United States of America, Department of Biomedical Informatics, Columbia University, New York, New York, United States of America, Department of Biochemistry and Molecular Biophysics, Columbia University, New York, New York, United States of America, Institute for Cancer Genetics, Columbia University, Columbia University, New York, New York, United States of America, Herbert Irving Comprehensive Cancer Center, Columbia University, New York, New York, United States of America

  • Stephen H. Friend ,

    ‡ These senior authors contributed equally to this paper.

    Affiliation Sage Bionetworks, Seattle, Washington, United States of America

  • Trey Ideker ,

    ‡ These senior authors contributed equally to this paper.

    Affiliation Departments of Medicine and Bioengineering, University of California San Diego, La Jolla, California, United States of America

  • Eric E. Schadt ,

    ‡ These senior authors contributed equally to this paper.

    Affiliation Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, New York, United States of America

  • Gustavo A. Stolovitzky ,

    ‡ These senior authors contributed equally to this paper.

    Affiliation IBM TJ Watson Research, Yorktown Heights, New York, United States of America

  •  [ ... ],
  • Adam A. Margolin

    margolin@sagebase.org

    ‡ These senior authors contributed equally to this paper.

    Affiliation Sage Bionetworks, Seattle, Washington, United States of America

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