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Defining the Estimated Core Genome of Bacterial Populations Using a Bayesian Decision Model

  • Andries J. van Tonder,

    Affiliation Nuffield Department of Medicine, The Peter Medawar Building for Pathogen Research, University of Oxford, Oxford, United Kingdom

  • Shilan Mistry,

    Affiliation Mathematical Institute, University of Oxford, Oxford, United Kingdom

  • James E. Bray,

    Affiliation Department of Zoology, University of Oxford, Oxford, United Kingdom

  • Dorothea M. C. Hill,

    Affiliation Department of Zoology, University of Oxford, Oxford, United Kingdom

  • Alison J. Cody,

    Affiliation Department of Zoology, University of Oxford, Oxford, United Kingdom

  • Chris L. Farmer,

    Affiliation Mathematical Institute, University of Oxford, Oxford, United Kingdom

  • Keith P. Klugman,

    Affiliation Hubert Department of Global Health Epidemiology, Rollins School of Public Health, Atlanta, Georgia, United States of America

  • Anne von Gottberg,

    Affiliation Centre for Respiratory Diseases and Meningitis, National Institute for Communicable Diseases, Johannesburg, South Africa

  • Stephen D. Bentley,

    Affiliations Pathogen Genomics Team, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, United Kingdom, Department of Medicine, University of Cambridge, Addenbrookes Hospital, Cambridge, United Kingdom

  • Julian Parkhill,

    Affiliation Pathogen Genomics Team, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, United Kingdom

  • Keith A. Jolley,

    Affiliation Department of Zoology, University of Oxford, Oxford, United Kingdom

  • Martin C. J. Maiden,

    Affiliation Department of Zoology, University of Oxford, Oxford, United Kingdom

  • Angela B. Brueggemann

    angela.brueggemann@ndm.ox.ac.uk

    Affiliation Nuffield Department of Medicine, The Peter Medawar Building for Pathogen Research, University of Oxford, Oxford, United Kingdom

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