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Research Article

PhyloGibbs: A Gibbs Sampling Motif Finder That Incorporates Phylogeny

  • Rahul Siddharthan,

    Affiliations: Center for Studies in Physics and Biology, The Rockefeller University, New York, New York, United States of America, Institute of Mathematical Sciences, Taramani, Chennai, India

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  • Eric D Siggia,

    Affiliation: Center for Studies in Physics and Biology, The Rockefeller University, New York, New York, United States of America

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  • Erik van Nimwegen mail

    To whom correspondence should be addressed. E-mail: erik.vannimwegen@unibas.ch

    Affiliations: Center for Studies in Physics and Biology, The Rockefeller University, New York, New York, United States of America, Division of Bioinformatics, Biozentrum, University of Basel, Basel, Switzerland

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  • Published: December 09, 2005
  • DOI: 10.1371/journal.pcbi.0010067

About the Authors

Rahul Siddharthan, Eric D Siggia, Erik van Nimwegen
Center for Studies in Physics and Biology, The Rockefeller University, New York, New York, United States of America
Rahul Siddharthan
Institute of Mathematical Sciences, Taramani, Chennai, India
Erik van Nimwegen
Division of Bioinformatics, Biozentrum, University of Basel, Basel, Switzerland

Corresponding Author

Email: erik.vannimwegen@unibas.ch

Competing Interests

The authors have declared that no competing interests exist.

Author Contributions

RS, EDS, and EvN conceived and designed the experiments. RS and EvN performed the experiments and analyzed the data. RS, EDS, and EvN contributed reagents/materials/analysis tools and wrote the paper.