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Research Article

Discovering Sequence Motifs with Arbitrary Insertions and Deletions

  • Martin C. Frith mail,

    martin@cbrc.jp

    Affiliation: Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology (AIST), Tokyo, Japan

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  • Neil F. W. Saunders,

    Affiliation: School of Molecular and Microbial Sciences, University of Queensland, Brisbane, Queensland, Australia

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  • Bostjan Kobe,

    Affiliations: School of Molecular and Microbial Sciences, University of Queensland, Brisbane, Queensland, Australia, Institute for Molecular Bioscience, University of Queensland, Brisbane, Queensland, Australia

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  • Timothy L. Bailey

    Affiliation: Institute for Molecular Bioscience, University of Queensland, Brisbane, Queensland, Australia

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  • Published: May 09, 2008
  • DOI: 10.1371/journal.pcbi.1000071

About the Authors

Martin C. Frith
Computational Biology Research Center, National Institute of Advanced Industrial Science and Technology (AIST), Tokyo, Japan
Neil F. W. Saunders, Bostjan Kobe
School of Molecular and Microbial Sciences, University of Queensland, Brisbane, Queensland, Australia
Bostjan Kobe, Timothy L. Bailey
Institute for Molecular Bioscience, University of Queensland, Brisbane, Queensland, Australia

Corresponding Author

Email: martin@cbrc.jp

Competing Interests

The authors have declared that no competing interests exist.

Author Contributions

Conceived and designed the experiments: MF TB. Performed the experiments: MF TB. Analyzed the data: MF TB. Wrote the paper: MF TB. Created the algorithm: MF. Contributed the kinase study: NS BK.