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Research Article

Efficient Algorithms for Probing the RNA Mutation Landscape

  • Jérôme Waldispühl,

    Affiliations: Department of Mathematics, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America, Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America

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  • Srinivas Devadas,

    Affiliation: Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America

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  • Bonnie Berger,

    Affiliations: Department of Mathematics, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America, Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America

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  • Peter Clote mail

    clote@bc.edu

    Affiliation: Department of Biology, Boston College, Chestnut Hill, Massachusetts, United States of America

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  • Published: August 08, 2008
  • DOI: 10.1371/journal.pcbi.1000124

About the Authors

Jérôme Waldispühl, Bonnie Berger
Department of Mathematics, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America
Jérôme Waldispühl, Srinivas Devadas, Bonnie Berger
Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America
Peter Clote
Department of Biology, Boston College, Chestnut Hill, Massachusetts, United States of America

Corresponding Author

Email: clote@bc.edu

Competing Interests

The authors have declared that no competing interests exist.

Author Contributions

Conceived and designed the experiments: JW. Performed the experiments: JW. Analyzed the data: JW SD BB PC. Wrote the paper: JW SD BB PC. Designed methodology: JW. Helped to design the experiments: BB. Helped to design the methodology: PC.