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Research Article

Predicting Human Nucleosome Occupancy from Primary Sequence

  • Shobhit Gupta equal contributor,

    equal contributor Contributed equally to this work with: Shobhit Gupta, Jonathan Dennis

    Affiliation: Department of Genome Sciences, University of Washington, Seattle, Washington, United States of America

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  • Jonathan Dennis equal contributor,

    equal contributor Contributed equally to this work with: Shobhit Gupta, Jonathan Dennis

    Affiliation: Department of Molecular Biology, Massachusetts General Hospital, Boston, Massachusetts, United States of America

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  • Robert E. Thurman,

    Affiliation: Division of Medical Genetics, University of Washington, Seattle, Washington, United States of America

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  • Robert Kingston,

    Affiliation: Department of Molecular Biology, Massachusetts General Hospital, Boston, Massachusetts, United States of America

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  • John A. Stamatoyannopoulos mail,

    jstam@u.washington.edu; noble@gs.washington.edu

    Affiliation: Department of Genome Sciences, University of Washington, Seattle, Washington, United States of America

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  • William Stafford Noble mail

    jstam@u.washington.edu; noble@gs.washington.edu

    Affiliations: Department of Genome Sciences, University of Washington, Seattle, Washington, United States of America, Department of Computer Science and Engineering, University of Washington, Seattle, Washington, United States of America

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  • Published: August 22, 2008
  • DOI: 10.1371/journal.pcbi.1000134

About the Authors

Shobhit Gupta, John A. Stamatoyannopoulos, William Stafford Noble
Department of Genome Sciences, University of Washington, Seattle, Washington, United States of America
Jonathan Dennis, Robert Kingston
Department of Molecular Biology, Massachusetts General Hospital, Boston, Massachusetts, United States of America
Robert E. Thurman
Division of Medical Genetics, University of Washington, Seattle, Washington, United States of America
William Stafford Noble
Department of Computer Science and Engineering, University of Washington, Seattle, Washington, United States of America

Corresponding Authors

Competing Interests

The authors have declared that no competing interests exist.

Author Contributions

Conceived and designed the experiments: SG JD JAS WSN. Performed the experiments: SG JD. Analyzed the data: SG JD RET. Wrote the paper: SG JD RK JAS WSN.