A Feature-Based Approach to Modeling Protein–DNA Interactions

Eilon Sharon; Shai Lubliner; Eran Segal

doi:10.1371/journal.pcbi.1000154

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Open Access

Peer-reviewed

Research Article

A Feature-Based Approach to Modeling Protein–DNA Interactions

Eilon Sharon ,

Contributed equally to this work with: Eilon Sharon, Shai Lubliner

Affiliation Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel
⨯
Shai Lubliner ,

Contributed equally to this work with: Eilon Sharon, Shai Lubliner

Affiliation Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel
⨯
Eran Segal

* E-mail: eran.segal@weizmann.ac.il

Affiliations Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel, Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel
⨯

A Feature-Based Approach to Modeling Protein–DNA Interactions

Eilon Sharon,
Shai Lubliner,
Eran Segal

Published: August 22, 2008
https://doi.org/10.1371/journal.pcbi.1000154

About the Authors

Eilon Sharon

Contributed equally to this work with: Eilon Sharon, Shai Lubliner

Affiliation Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel

Shai Lubliner

Contributed equally to this work with: Eilon Sharon, Shai Lubliner

Affiliation Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel

Eran Segal

* E-mail: eran.segal@weizmann.ac.il

Affiliations Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel, Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel

Competing Interests

The authors have declared that no competing interests exist.

Author Contributions

Conceived and designed the experiments: E. Sharon, S. Lubliner, E. Segal. Performed the experiments: E. Sharon, S. Lubliner, E. Segal. Analyzed the data: E. Sharon, S. Lubliner, E. Segal. Contributed reagents/materials/analysis tools: E. Sharon, S. Lubliner, E. Segal. Wrote the paper: E. Sharon, S. Lubliner, E. Segal.

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Sequence motif analysis
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Sequence alignment
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Algorithms
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Markov models
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Nucleotides
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Network motifs
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Probability distribution
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Computer software
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