Cross-Over between Discrete and Continuous Protein Structure Space: Insights into Automatic Classification and Networks of Protein Structures

Alberto Pascual-García; David Abia; Ángel R. Ortiz; Ugo Bastolla

doi:10.1371/journal.pcbi.1000331

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Open Access

Peer-reviewed

Research Article

Cross-Over between Discrete and Continuous Protein Structure Space: Insights into Automatic Classification and Networks of Protein Structures

Alberto Pascual-García,

Affiliation Centro de Biología Molecular ‘Severo Ochoa’ (CSIC-UAM), Cantoblanco, Madrid, Spain
⨯
David Abia,

Affiliation Centro de Biología Molecular ‘Severo Ochoa’ (CSIC-UAM), Cantoblanco, Madrid, Spain
⨯
Ángel R. Ortiz †,

† Deceased.

Affiliation Centro de Biología Molecular ‘Severo Ochoa’ (CSIC-UAM), Cantoblanco, Madrid, Spain
⨯
Ugo Bastolla

* E-mail: ubastolla@cbm.uam.es

Affiliation Centro de Biología Molecular ‘Severo Ochoa’ (CSIC-UAM), Cantoblanco, Madrid, Spain
⨯

Cross-Over between Discrete and Continuous Protein Structure Space: Insights into Automatic Classification and Networks of Protein Structures

Alberto Pascual-García,
David Abia,
Ángel R. Ortiz,
Ugo Bastolla

Published: March 27, 2009
https://doi.org/10.1371/journal.pcbi.1000331

About the Authors

Alberto Pascual-García

Affiliation Centro de Biología Molecular ‘Severo Ochoa’ (CSIC-UAM), Cantoblanco, Madrid, Spain

David Abia

Affiliation Centro de Biología Molecular ‘Severo Ochoa’ (CSIC-UAM), Cantoblanco, Madrid, Spain

Ángel R. Ortiz

† Deceased.

Affiliation Centro de Biología Molecular ‘Severo Ochoa’ (CSIC-UAM), Cantoblanco, Madrid, Spain

Ugo Bastolla

* E-mail: ubastolla@cbm.uam.es

Affiliation Centro de Biología Molecular ‘Severo Ochoa’ (CSIC-UAM), Cantoblanco, Madrid, Spain

Competing Interests

The authors have declared that no competing interests exist.

Author Contributions

Conceived and designed the experiments: ÁRO UB. Performed the experiments: APG. Analyzed the data: APG UB. Contributed reagents/materials/analysis tools: DA. Wrote the paper: UB.

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Protein domains
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Protein structure
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Clustering algorithms
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Molecular evolution
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Protein structure comparison
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Protein folding
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Clustering coefficients
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Similarity measures
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