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Research Article

A Comprehensive Benchmark of Kernel Methods to Extract Protein–Protein Interactions from Literature

  • Domonkos Tikk mail,

    tikk@informatik.hu-berlin.de

    Affiliations: Knowledge Management in Bioinformatics, Computer Science Department, Humboldt-Universität zu Berlin, Berlin, Germany, Department of Telecommunications and Media Informatics, Budapest University of Technology and Economics, Budapest, Hungary

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  • Philippe Thomas,

    Affiliation: Knowledge Management in Bioinformatics, Computer Science Department, Humboldt-Universität zu Berlin, Berlin, Germany

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  • Peter Palaga,

    Affiliation: Knowledge Management in Bioinformatics, Computer Science Department, Humboldt-Universität zu Berlin, Berlin, Germany

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  • Jörg Hakenberg,

    Affiliation: Department of Computer Science and Engineering, Arizona State University, Tempe, Arizona, United States of America

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  • Ulf Leser

    Affiliation: Knowledge Management in Bioinformatics, Computer Science Department, Humboldt-Universität zu Berlin, Berlin, Germany

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  • Published: July 01, 2010
  • DOI: 10.1371/journal.pcbi.1000837

About the Authors

Domonkos Tikk, Philippe Thomas, Peter Palaga, Ulf Leser
Knowledge Management in Bioinformatics, Computer Science Department, Humboldt-Universität zu Berlin, Berlin, Germany
Domonkos Tikk
Department of Telecommunications and Media Informatics, Budapest University of Technology and Economics, Budapest, Hungary
Jörg Hakenberg
Department of Computer Science and Engineering, Arizona State University, Tempe, Arizona, United States of America

Corresponding Author

Email: tikk@informatik.hu-berlin.de

Competing Interests

The authors have declared that no competing interests exist.

Author Contributions

Conceived and designed the experiments: DT UL. Performed the experiments: DT PT PP. Analyzed the data: DT PT PP. Wrote the paper: DT PT JH UL.