Robust Detection of Hierarchical Communities from Escherichia coli Gene Expression Data

Santiago Treviño III; Yudong Sun; Tim F. Cooper; Kevin E. Bassler

doi:10.1371/journal.pcbi.1002391

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Open Access

Peer-reviewed

Research Article

Robust Detection of Hierarchical Communities from Escherichia coli Gene Expression Data

Santiago Treviño III,

Affiliations Department of Physics, University of Houston, Houston, Texas, United States of America, Texas Center for Superconductivity, University of Houston, Houston, Texas, United States of America
⨯
Yudong Sun,

Affiliations Department of Physics, University of Houston, Houston, Texas, United States of America, Texas Center for Superconductivity, University of Houston, Houston, Texas, United States of America
⨯
Tim F. Cooper,

Affiliation Department of Biology and Biochemistry, University of Houston, Houston, Texas, United States of America
⨯
Kevin E. Bassler

* E-mail: bassler@uh.edu

Affiliations Department of Physics, University of Houston, Houston, Texas, United States of America, Texas Center for Superconductivity, University of Houston, Houston, Texas, United States of America
⨯

Robust Detection of Hierarchical Communities from Escherichia coli Gene Expression Data

Santiago Treviño III,
Yudong Sun,
Tim F. Cooper,
Kevin E. Bassler

Published: February 23, 2012
https://doi.org/10.1371/journal.pcbi.1002391

About the Authors

Santiago Treviño III

Affiliations Department of Physics, University of Houston, Houston, Texas, United States of America, Texas Center for Superconductivity, University of Houston, Houston, Texas, United States of America

Yudong Sun

Tim F. Cooper

Affiliation Department of Biology and Biochemistry, University of Houston, Houston, Texas, United States of America

Kevin E. Bassler

* E-mail: bassler@uh.edu

Competing Interests

The authors have declared that no competing interests exist.

Author Contributions

Conceived and designed the experiments: KEB. Performed the experiments: ST YS. Analyzed the data: ST YS TFC KEB. Contributed reagents/materials/analysis tools: TFC. Wrote the paper: ST YS TFC KEB. Designed software used in the experiments: ST YS.

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Gene ontologies
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Genetic networks
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Community structure
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Gene regulation
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Gene expression
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Gene regulatory networks
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Operons
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Algorithms
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