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Research Article

Combinatorial Pooling Enables Selective Sequencing of the Barley Gene Space

  • Stefano Lonardi mail,

    stelo@cs.ucr.edu

    Affiliation: Department of Computer Science and Engineering, University of California, Riverside, California, United States of America

    X
  • Denisa Duma,

    Affiliation: Department of Computer Science and Engineering, University of California, Riverside, California, United States of America

    X
  • Matthew Alpert,

    Affiliation: Department of Computer Science and Engineering, University of California, Riverside, California, United States of America

    X
  • Francesca Cordero,

    Affiliation: Department of Computer Science, Università di Torino, Torino, Italy

    X
  • Marco Beccuti,

    Affiliation: Department of Computer Science, Università di Torino, Torino, Italy

    X
  • Prasanna R. Bhat,

    Affiliations: Department of Botany and Plant Sciences, University of California, Riverside, California, United States of America, Monsanto Research Centre, Bangalore, India

    X
  • Yonghui Wu,

    Affiliations: Department of Computer Science and Engineering, University of California, Riverside, California, United States of America, Google, Inc., Mountain View, California, United States of America

    X
  • Gianfranco Ciardo,

    Affiliation: Department of Computer Science and Engineering, University of California, Riverside, California, United States of America

    X
  • Burair Alsaihati,

    Affiliations: Department of Computer Science and Engineering, University of California, Riverside, California, United States of America, Joint Center for Genomic Research, King Abdulaziz City for Science and Technology, Riyadh, Saudi Arabia

    X
  • Yaqin Ma,

    Affiliation: Department of Botany and Plant Sciences, University of California, Riverside, California, United States of America

    X
  • Steve Wanamaker,

    Affiliation: Department of Botany and Plant Sciences, University of California, Riverside, California, United States of America

    X
  • Josh Resnik,

    Affiliation: Department of Botany and Plant Sciences, University of California, Riverside, California, United States of America

    X
  • Serdar Bozdag,

    Affiliation: Department of Mathematics, Statistics and Computer Science, Marquette University, Milwaukee, Wisconsin, United States of America

    X
  • Ming-Cheng Luo,

    Affiliation: Department of Plant Sciences, University of California, Davis, California, United States of America

    X
  • Timothy J. Close

    Affiliation: Department of Botany and Plant Sciences, University of California, Riverside, California, United States of America

    X
  • Published: April 04, 2013
  • DOI: 10.1371/journal.pcbi.1003010

About the Authors

Stefano Lonardi, Denisa Duma, Matthew Alpert, Yonghui Wu, Gianfranco Ciardo, Burair Alsaihati
Department of Computer Science and Engineering, University of California, Riverside, California, United States of America
Francesca Cordero, Marco Beccuti
Department of Computer Science, Università di Torino, Torino, Italy
Prasanna R. Bhat, Yaqin Ma, Steve Wanamaker, Josh Resnik, Timothy J. Close
Department of Botany and Plant Sciences, University of California, Riverside, California, United States of America
Prasanna R. Bhat
Monsanto Research Centre, Bangalore, India
Yonghui Wu
Google, Inc., Mountain View, California, United States of America
Burair Alsaihati
Joint Center for Genomic Research, King Abdulaziz City for Science and Technology, Riyadh, Saudi Arabia
Serdar Bozdag
Department of Mathematics, Statistics and Computer Science, Marquette University, Milwaukee, Wisconsin, United States of America
Ming-Cheng Luo
Department of Plant Sciences, University of California, Davis, California, United States of America

Corresponding Author

Email: stelo@cs.ucr.edu

Competing Interests

The authors have declared that no competing interests exist.

Author Contributions

Conceived and designed the experiments: SL TJC. Performed the experiments: PRB YM SW JR MCL TJC. Analyzed the data: SL DD MA FC MB YW GC BA SW SB TJC. Contributed reagents/materials/analysis tools: FC MB PRB YW GC BA YM SW JR SB MCL TJC. Wrote the paper: SL TJC.