About the Authors
- André Yoshiaki Kashiwabara
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Affiliation Graduate Program in Informatics, Federal University of Technology - Paraná, Cornélio Procópio, Paraná, Brazil
- Ígor Bonadio
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Affiliation Computer Science Graduate Program, Universidade de São Paulo, São Paulo, Brazil
- Vitor Onuchic
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Affiliation Bioinformatics Graduate Program, Universidade de São Paulo, São Paulo, Brazil
- Felipe Amado
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Affiliation Computer Science Undergraduate Program, Universidade de São Paulo, São Paulo, Brazil
- Rafael Mathias
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Affiliation Computer Science Graduate Program, Universidade de São Paulo, São Paulo, Brazil
- Alan Mitchell Durham
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* E-mail: aland@usp.br
Affiliation Department of Computer Science, Instituto de Matemática e Estatística, Universidade de São Paulo, São Paulo, Brazil
Competing Interests
The authors have declared that no competing interests exist.
Author Contributions
Conceived and designed the experiments: AYK AMD. Performed the experiments: AYK. Analyzed the data: AYK AMD. Wrote the paper: AYK AMD. Designed and implemented the PairHMM model and related algorithms: VO. Designed and implemented ProfileHMM and related algorithms: FA RM. Implemented the specificaion parser with error reporting and some algorithms of the GHMM probabilistic model: IB.