January 2007

Reactive Animation simulation of thymocyte development viewed at two scales: zooming out and zooming in (see Efroni et al).

Editorial

Moving Education Forward

Fran Lewitter

PLOS Computational Biology: published January 26, 2007 | https://doi.org/10.1371/journal.pcbi.0030019

Education

Automated Querying of Genome Databases

Peter Schattner

PLOS Computational Biology: published January 26, 2007 | https://doi.org/10.1371/journal.pcbi.0030001

Obituary

In Remembrance: Reinhart Heinrich 1946–2006

Thomas Höfer

PLOS Computational Biology: published January 26, 2007 | https://doi.org/10.1371/journal.pcbi.0030018

Research Articles

Computational Aspects of Feedback in Neural Circuits

Wolfgang Maass, Prashant Joshi, Eduardo D Sontag

PLOS Computational Biology: published January 19, 2007 | https://doi.org/10.1371/journal.pcbi.0020165

Nitric Oxide Regulates Input Specificity of Long-Term Depression and Context Dependence of Cerebellar Learning

Hideaki Ogasawara, Tomokazu Doi, Kenji Doya, Mitsuo Kawato

PLOS Computational Biology: published January 12, 2007 | https://doi.org/10.1371/journal.pcbi.0020179

A Phylogenomic Study of Human, Dog, and Mouse

Gina Cannarozzi, Adrian Schneider, Gaston Gonnet

PLOS Computational Biology: published January 5, 2007 | https://doi.org/10.1371/journal.pcbi.0030002

Using Phylogeny to Improve Genome-Wide Distant Homology Recognition

Sanne Abeln, Carlo Teubner, Charlotte M Deane

PLOS Computational Biology: published January 19, 2007 | https://doi.org/10.1371/journal.pcbi.0030003

Modeling HER2 Effects on Cell Behavior from Mass Spectrometry Phosphotyrosine Data

Neil Kumar, Alejandro Wolf-Yadlin, Forest M White, Douglas A Lauffenburger

PLOS Computational Biology: published January 5, 2007 | https://doi.org/10.1371/journal.pcbi.0030004

Protein and DNA Sequence Determinants of Thermophilic Adaptation

Konstantin B Zeldovich, Igor N Berezovsky, Eugene I Shakhnovich

PLOS Computational Biology: published January 12, 2007 | https://doi.org/10.1371/journal.pcbi.0030005

Both Ligand- and Cell-Specific Parameters Control Ligand Agonism in a Kinetic Model of G Protein–Coupled Receptor Signaling

Tamara L Kinzer-Ursem, Jennifer J Linderman

PLOS Computational Biology: published January 12, 2007 | https://doi.org/10.1371/journal.pcbi.0030006

Large-Scale Discovery of Promoter Motifs in Drosophila melanogaster

Thomas A Down, Casey M Bergman, Jing Su, Tim J. P Hubbard

PLOS Computational Biology: published January 19, 2007 | https://doi.org/10.1371/journal.pcbi.0030007

Identification of Functional Subclasses in the DJ-1 Superfamily Proteins

Ying Wei, Dagmar Ringe, Mark A Wilson, Mary Jo Ondrechen

PLOS Computational Biology: published January 26, 2007 | https://doi.org/10.1371/journal.pcbi.0030010

Evolutionary Interactions between N-Linked Glycosylation Sites in the HIV-1 Envelope

Art F. Y Poon, Fraser I Lewis, Sergei L. Kosakovsky Pond, Simon D. W Frost

PLOS Computational Biology: published January 19, 2007 | https://doi.org/10.1371/journal.pcbi.0030011

Emergent Dynamics of Thymocyte Development and Lineage Determination

Sol Efroni, David Harel, Irun R Cohen

PLOS Computational Biology: published January 26, 2007 | https://doi.org/10.1371/journal.pcbi.0030013

Detecting Key Structural Features within Highly Recombined Genes

John E Wertz, Karen F McGregor, Debra E Bessen

PLOS Computational Biology: published January 26, 2007 | https://doi.org/10.1371/journal.pcbi.0030014

Cover

Reactive Animation simulation of thymocyte development