Ten Simple Rules for Organizing an Unconference

Aidan Budd, Holger Dinkel, Manuel Corpas, Jonathan C. Fuller, Laura Rubinat, Damien P. Devos, Pierre H. Khoueiry, Konrad U. Förstner, Fotis Georgatos, Francis Rowland, Malvika Sharan, Janos X. Binder, Tom Grace, Karyn Traphagen, Adam Gristwood, Natasha T. Wood

PLOS Computational Biology: published January 29, 2015 | https://doi.org/10.1371/journal.pcbi.1003905

Advancements and Challenges in Computational Biology

Ruth Nussinov

PLOS Computational Biology: published January 8, 2015 | https://doi.org/10.1371/journal.pcbi.1004053

ISCB Ebola Award for Important Future Research on the Computational Biology of Ebola Virus

Peter D. Karp, Bonnie Berger, Diane Kovats, Thomas Lengauer, Michal Linial, Pardis Sabeti, Winston Hide, Burkhard Rost

PLOS Computational Biology: published January 29, 2015 | https://doi.org/10.1371/journal.pcbi.1004087

150 Years of the Mass Action Law

Eberhard O. Voit, Harald A. Martens, Stig W. Omholt

PLOS Computational Biology: published January 8, 2015 | https://doi.org/10.1371/journal.pcbi.1004012

GenomicScape: An Easy-to-Use Web Tool for Gene Expression Data Analysis. Application to Investigate the Molecular Events in the Differentiation of B Cells into Plasma Cells

Alboukadel Kassambara, Thierry Rème, Michel Jourdan, Thierry Fest, Dirk Hose, Karin Tarte, Bernard Klein

PLOS Computational Biology: published January 29, 2015 | https://doi.org/10.1371/journal.pcbi.1004077

Computation in Dynamically Bounded Asymmetric Systems

Ueli Rutishauser, Jean-Jacques Slotine, Rodney Douglas

PLOS Computational Biology: published January 24, 2015 | https://doi.org/10.1371/journal.pcbi.1004039

Laminar and Dorsoventral Molecular Organization of the Medial Entorhinal Cortex Revealed by Large-scale Anatomical Analysis of Gene Expression

Helen L. Ramsden, Gülşen Sürmeli, Steven G. McDonagh, Matthew F. Nolan

PLOS Computational Biology: published January 23, 2015 | https://doi.org/10.1371/journal.pcbi.1004032

A Probabilistic Palimpsest Model of Visual Short-term Memory

Loic Matthey, Paul M. Bays, Peter Dayan

PLOS Computational Biology: published January 22, 2015 | https://doi.org/10.1371/journal.pcbi.1004003

A New Algorithm to Diagnose Atrial Ectopic Origin from Multi Lead ECG Systems - Insights from 3D Virtual Human Atria and Torso

Erick A. Perez Alday, Michael A. Colman, Philip Langley, Timothy D. Butters, Jonathan Higham, Antony J. Workman, Jules C. Hancox, Henggui Zhang

PLOS Computational Biology: published January 22, 2015 | https://doi.org/10.1371/journal.pcbi.1004026

A Computational Approach to Identifying Gene-microRNA Modules in Cancer

Daeyong Jin, Hyunju Lee

PLOS Computational Biology: published January 22, 2015 | https://doi.org/10.1371/journal.pcbi.1004042

Modulation of Calmodulin Lobes by Different Targets: An Allosteric Model with Hemiconcerted Conformational Transitions

Massimo Lai, Denis Brun, Stuart J. Edelstein, Nicolas Le Novère

PLOS Computational Biology: published January 22, 2015 | https://doi.org/10.1371/journal.pcbi.1004063

Inference of Quantitative Models of Bacterial Promoters from Time-Series Reporter Gene Data

Diana Stefan, Corinne Pinel, Stéphane Pinhal, Eugenio Cinquemani, Johannes Geiselmann, Hidde de Jong

PLOS Computational Biology: published January 15, 2015 | https://doi.org/10.1371/journal.pcbi.1004028

Related Articles

1. Correction: Inference of Quantitative Models of Bacterial Promoters from Time-Series Reporter Gene Data

The Formation of Multi-synaptic Connections by the Interaction of Synaptic and Structural Plasticity and Their Functional Consequences

Michael Fauth, Florentin Wörgötter, Christian Tetzlaff

PLOS Computational Biology: published January 15, 2015 | https://doi.org/10.1371/journal.pcbi.1004031

Synaptic Plasticity Enables Adaptive Self-Tuning Critical Networks

Nigel Stepp, Dietmar Plenz, Narayan Srinivasa

PLOS Computational Biology: published January 15, 2015 | https://doi.org/10.1371/journal.pcbi.1004043

System Model Network for Adipose Tissue Signatures Related to Weight Changes in Response to Calorie Restriction and Subsequent Weight Maintenance

Emilie Montastier, Nathalie Villa-Vialaneix, Sylvie Caspar-Bauguil, Petr Hlavaty, Eva Tvrzicka, Ignacio Gonzalez, Wim H. M. Saris, Dominique Langin, Marie Kunesova, Nathalie Viguerie

PLOS Computational Biology: published January 15, 2015 | https://doi.org/10.1371/journal.pcbi.1004047

The Interaction between Seasonality and Pulsed Interventions against Malaria in Their Effects on the Reproduction Number

Jamie T. Griffin

PLOS Computational Biology: published January 15, 2015 | https://doi.org/10.1371/journal.pcbi.1004057

A Computational Framework for 3D Mechanical Modeling of Plant Morphogenesis with Cellular Resolution

Frédéric Boudon, Jérôme Chopard, Olivier Ali, Benjamin Gilles, Olivier Hamant, Arezki Boudaoud, Jan Traas, Christophe Godin

PLOS Computational Biology: published January 8, 2015 | https://doi.org/10.1371/journal.pcbi.1003950

Related Articles

1. Correction: A Computational Framework for 3D Mechanical Modeling of Plant Morphogenesis with Cellular Resolution

Modulation of Elementary Calcium Release Mediates a Transition from Puffs to Waves in an IP₃R Cluster Model

Martin Rückl, Ian Parker, Jonathan S. Marchant, Chamakuri Nagaiah, Friedrich W. Johenning, Sten Rüdiger

PLOS Computational Biology: published January 8, 2015 | https://doi.org/10.1371/journal.pcbi.1003965

Simulating the Complex Cell Design of Trypanosoma brucei and Its Motility

Davod Alizadehrad, Timothy Krüger, Markus Engstler, Holger Stark

PLOS Computational Biology: published January 8, 2015 | https://doi.org/10.1371/journal.pcbi.1003967

Bayesian History Matching of Complex Infectious Disease Models Using Emulation: A Tutorial and a Case Study on HIV in Uganda

Ioannis Andrianakis, Ian R. Vernon, Nicky McCreesh, Trevelyan J. McKinley, Jeremy E. Oakley, Rebecca N. Nsubuga, Michael Goldstein, Richard G. White

PLOS Computational Biology: published January 8, 2015 | https://doi.org/10.1371/journal.pcbi.1003968

Mapping the Pareto Optimal Design Space for a Functionally Deimmunized Biotherapeutic Candidate

Regina S. Salvat, Andrew S. Parker, Yoonjoo Choi, Chris Bailey-Kellogg, Karl E. Griswold

PLOS Computational Biology: published January 8, 2015 | https://doi.org/10.1371/journal.pcbi.1003988

Systems Level Analysis of Systemic Sclerosis Shows a Network of Immune and Profibrotic Pathways Connected with Genetic Polymorphisms

J. Matthew Mahoney, Jaclyn Taroni, Viktor Martyanov, Tammara A. Wood, Casey S. Greene, Patricia A. Pioli, Monique E. Hinchcliff, Michael L. Whitfield

PLOS Computational Biology: published January 8, 2015 | https://doi.org/10.1371/journal.pcbi.1004005

Related Articles

1. Correction: Systems Level Analysis of Systemic Sclerosis Shows a Network of Immune and Profibrotic Pathways Connected with Genetic Polymorphisms

A RESTful API for Accessing Microbial Community Data for MG-RAST

Andreas Wilke, Jared Bischof, Travis Harrison, Tom Brettin, Mark D'Souza, Wolfgang Gerlach, Hunter Matthews, Tobias Paczian, Jared Wilkening, Elizabeth M. Glass, Narayan Desai, Folker Meyer

PLOS Computational Biology: published January 8, 2015 | https://doi.org/10.1371/journal.pcbi.1004008

What Makes a Protein Sequence a Prion?

Raimon Sabate, Frederic Rousseau, Joost Schymkowitz, Salvador Ventura

PLOS Computational Biology: published January 8, 2015 | https://doi.org/10.1371/journal.pcbi.1004013

Novel Inhibitors Induce Large Conformational Changes of GAB1 Pleckstrin Homology Domain and Kill Breast Cancer Cells

Lu Chen, Lei Du-Cuny, Sylvestor Moses, Sabrina Dumas, Zuohe Song, Abdol Hossein Rezaeian, Hui-Kuan Lin, Emmanuelle J. Meuillet, Shuxing Zhang

PLOS Computational Biology: published January 8, 2015 | https://doi.org/10.1371/journal.pcbi.1004021

Fast and Accurate Resonance Assignment of Small-to-Large Proteins by Combining Automated and Manual Approaches

Markus Niklasson, Alexandra Ahlner, Cecilia Andresen, Joseph A. Marsh, Patrik Lundström

PLOS Computational Biology: published January 8, 2015 | https://doi.org/10.1371/journal.pcbi.1004022

The Thalidomide-Binding Domain of Cereblon Defines the CULT Domain Family and Is a New Member of the β-Tent Fold

Andrei N. Lupas, Hongbo Zhu, Mateusz Korycinski

PLOS Computational Biology: published January 8, 2015 | https://doi.org/10.1371/journal.pcbi.1004023

Analysis of Individual Protein Regions Provides Novel Insights on Cancer Pharmacogenomics

Eduard Porta Pardo, Adam Godzik

PLOS Computational Biology: published January 8, 2015 | https://doi.org/10.1371/journal.pcbi.1004024

Identification of Constrained Cancer Driver Genes Based on Mutation Timing

Thomas Sakoparnig, Patrick Fried, Niko Beerenwinkel

PLOS Computational Biology: published January 8, 2015 | https://doi.org/10.1371/journal.pcbi.1004027

Brain Network Adaptability across Task States

Elizabeth N. Davison, Kimberly J. Schlesinger, Danielle S. Bassett, Mary-Ellen Lynall, Michael B. Miller, Scott T. Grafton, Jean M. Carlson

PLOS Computational Biology: published January 8, 2015 | https://doi.org/10.1371/journal.pcbi.1004029

Activation of Parallel Fiber Feedback by Spatially Diffuse Stimuli Reduces Signal and Noise Correlations via Independent Mechanisms in a Cerebellum-Like Structure

Benjamin Simmonds, Maurice J. Chacron

PLOS Computational Biology: published January 8, 2015 | https://doi.org/10.1371/journal.pcbi.1004034

Orientation Selectivity in Inhibition-Dominated Networks of Spiking Neurons: Effect of Single Neuron Properties and Network Dynamics

Sadra Sadeh, Stefan Rotter

PLOS Computational Biology: published January 8, 2015 | https://doi.org/10.1371/journal.pcbi.1004045