Table of Contents: March 2008


Typical FM bat in a virtual world of stochastic echoes

Image Credit: Image by Yossi Yovel and Dietmar Nill.
Issue Image

A typical frequency-modulated pulse-emitting bat (Myotis myotis) in a world of complex echoes (see Yovel et al., e1000032).


Open Access: Taking Full Advantage of the Content

Philip E. Bourne, J. Lynn Fink, Mark Gerstein


Research Articles

Chromophore Protonation State Controls Photoswitching of the Fluoroprotein asFP595

Lars V. Schäfer, Gerrit Groenhof, Martial Boggio-Pasqua, Michael A. Robb, Helmut Grubmüller

Shaping Embodied Neural Networks for Adaptive Goal-directed Behavior

Zenas C. Chao, Douglas J. Bakkum, Steve M. Potter

Prediction of Human Disease Genes by Human-Mouse Conserved Coexpression Analysis

Ugo Ala, Rosario Michael Piro, Elena Grassi, Christian Damasco, Lorenzo Silengo, Martin Oti, Paolo Provero, Ferdinando Di Cunto

A Semi-Supervised Method for Predicting Transcription Factor–Gene Interactions in Escherichia coli

Jason Ernst, Qasim K. Beg, Krin A. Kay, Gábor Balázsi, Zoltán N. Oltvai, Ziv Bar-Joseph

The Dynamics of Human Body Weight Change

Carson C. Chow, Kevin D. Hall

Uncovering a Macrophage Transcriptional Program by Integrating Evidence from Motif Scanning and Expression Dynamics

Stephen A. Ramsey, Sandy L. Klemm, Daniel E. Zak, Kathleen A. Kennedy, Vesteinn Thorsson, Bin Li, Mark Gilchrist, Elizabeth S. Gold, Carrie D. Johnson, Vladimir Litvak, Garnet Navarro, Jared C. Roach, Carrie M. Rosenberger, Alistair G. Rust, Natalya Yudkovsky, Alan Aderem, Ilya Shmulevich

Plant Classification from Bat-Like Echolocation Signals

Yossi Yovel, Matthias Otto Franz, Peter Stilz, Hans-Ulrich Schnitzler

A Hidden Feedback in Signaling Cascades Is Revealed

Alejandra C. Ventura, Jacques-A. Sepulchre, Sofía D. Merajver

Entropy Measures Quantify Global Splicing Disorders in Cancer

William Ritchie, Samuel Granjeaud, Denis Puthier, Daniel Gautheret

A Continuum Model for Metabolic Gas Exchange in Pear Fruit

Q. Tri Ho, Pieter Verboven, Bert E. Verlinden, Jeroen Lammertyn, Stefan Vandewalle, Bart M. Nicolaï

Neural Coding of Natural Stimuli: Information at Sub-Millisecond Resolution

Ilya Nemenman, Geoffrey D. Lewen, William Bialek, Rob R. de Ruyter van Steveninck