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Research Article

DNA Familial Binding Profiles Made Easy: Comparison of Various Motif Alignment and Clustering Strategies

  • Shaun Mahony mail,

    To whom correspondence should be addressed. E-mail: shaun.mahony@ccbb.pitt.edu (SM); benos@pitt.edu (PVB)

    Affiliations: Department of Computational Biology, School of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America, Department of Computer Science, Faculty of Arts and Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America

    X
  • Philip E Auron,

    Affiliations: Department of Biological Sciences, Duquesne University, Pittsburgh, Pennsylvania, United States of America, Department of Molecular Genetics and Biochemistry, School of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America

    X
  • Panayiotis V Benos mail

    To whom correspondence should be addressed. E-mail: shaun.mahony@ccbb.pitt.edu (SM); benos@pitt.edu (PVB)

    Affiliations: Department of Computational Biology, School of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America, Department of Human Genetics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America, University of Pittsburgh Cancer Institute, School of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America

    X
  • Published: March 30, 2007
  • DOI: 10.1371/journal.pcbi.0030061

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