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Research Article

RNA-Seq Mapping and Detection of Gene Fusions with a Suffix Array Algorithm

  • Onur Sakarya mail,

    osakarya@yahoo.com (OS); fiona.hyland@lifetech.com (FCH); asim.siddiqui@lifetech.com (ASS)

    Affiliation: Life Technologies, Foster City, California, United States of America

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  • Heinz Breu,

    Affiliation: Life Technologies, Foster City, California, United States of America

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  • Milan Radovich,

    Affiliation: Indiana University School of Medicine, Indianapolis, Indiana, United States of America

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  • Yongzhi Chen,

    Affiliation: Life Technologies, Foster City, California, United States of America

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  • Yulei N. Wang,

    Affiliation: Life Technologies, Foster City, California, United States of America

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  • Catalin Barbacioru,

    Affiliation: Life Technologies, Foster City, California, United States of America

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  • Sowmi Utiramerur,

    Affiliation: Life Technologies, Foster City, California, United States of America

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  • Penn P. Whitley,

    Affiliation: Life Technologies (Ambion), Austin, Texas, United States of America

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  • Joel P. Brockman,

    Affiliation: Life Technologies (Ambion), Austin, Texas, United States of America

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  • Paolo Vatta,

    Affiliation: Life Technologies, Foster City, California, United States of America

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  • Zheng Zhang,

    Affiliation: Life Technologies, Foster City, California, United States of America

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  • Liviu Popescu,

    Affiliation: Life Technologies, Foster City, California, United States of America

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  • Matthew W. Muller,

    Affiliation: Life Technologies, Foster City, California, United States of America

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  • Vidya Kudlingar,

    Affiliation: Life Technologies, Foster City, California, United States of America

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  • Nriti Garg,

    Affiliation: Life Technologies, Foster City, California, United States of America

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  • Chieh-Yuan Li,

    Affiliation: Life Technologies, Foster City, California, United States of America

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  • Benjamin S. Kong,

    Affiliation: Life Technologies, Foster City, California, United States of America

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  • John P. Bodeau,

    Affiliation: Life Technologies, Foster City, California, United States of America

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  • Robert C. Nutter,

    Affiliation: Life Technologies, Foster City, California, United States of America

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  • Jian Gu,

    Affiliation: Life Technologies (Ambion), Austin, Texas, United States of America

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  • Kelli S. Bramlett,

    Affiliation: Life Technologies (Ambion), Austin, Texas, United States of America

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  • Jeffrey K. Ichikawa,

    Affiliation: Life Technologies, Foster City, California, United States of America

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  • Fiona C. Hyland mail,

    osakarya@yahoo.com (OS); fiona.hyland@lifetech.com (FCH); asim.siddiqui@lifetech.com (ASS)

    Affiliation: Life Technologies, Foster City, California, United States of America

    X
  • Asim S. Siddiqui mail

    osakarya@yahoo.com (OS); fiona.hyland@lifetech.com (FCH); asim.siddiqui@lifetech.com (ASS)

    Affiliation: Life Technologies, Foster City, California, United States of America

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  • Published: April 05, 2012
  • DOI: 10.1371/journal.pcbi.1002464

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