Neural List of genes under consideration: CCND2 CDK2 CDK4 CDKN1B CDKN2A CDKN2C ERBB3 KRAS MDM2 MDM4 PIK3C2B PIK3C2G PIK3CG PTEN SRC Pairwise List of genes mapped to networks AKTSig SRC PIK3CG PTEN RASSig ERBB3 KRAS PI3K2Sig PIK3C2B PIK3C2G P53Sig CDKN2A MDM2 MDM4 RBSig CDKN1B CDKN2A CDKN2C CDK2 CDK4 CCND2 List of alleles with high marginal frequency: 0 AKTSig_1 1 RASSig_1 2 PI3K2Sig_1 3 P53Sig_-1 4 RBSig_1 5 RBSig_-1 List of highly correlated alleles with high frequency of mutation: 3 P53Sig_-1 5 RBSig_-1 8.14919385795e-15 1 RASSig_1 2 PI3K2Sig_1 3.70322084039e-08 2 PI3K2Sig_1 3 P53Sig_-1 4.29287300923e-06 3 P53Sig_-1 4 RBSig_1 9.24157041028e-06 1 RASSig_1 5 RBSig_-1 0.0276433477009 0 AKTSig_1 3 P53Sig_-1 0.03086722195 0 AKTSig_1 5 RBSig_-1 0.0458108770211 List of interaction sets: 0 AKTSig_1 3 P53Sig_-1 0 AKTSig_1 5 RBSig_-1 1 RASSig_1 2 PI3K2Sig_1 1 RASSig_1 5 RBSig_-1 2 PI3K2Sig_1 3 P53Sig_-1 3 P53Sig_-1 4 RBSig_1 3 P53Sig_-1 5 RBSig_-1 AKTSig_1_P53Sig_-1 Counts: 3 27 1 130 Path: 0-1-3 Frequency: 0.517497756182 Bootstrap: 8686.0 Path: 0-2-3 Frequency: 0.482502243818 Bootstrap: 1314.0 AKTSig_1_RBSig_-1 Counts: 3 33 1 124 Path: 0-1-3 Frequency: 0.381450237625 Bootstrap: 807.0 Path: 0-2-3 Frequency: 0.618549762375 Bootstrap: 9193.0 RASSig_1_PI3K2Sig_1 Counts: 107 1 38 15 Path: 0-1-3 Frequency: 0.0358410617254 Bootstrap: 21.0 Path: 0-2-3 Frequency: 0.964158938275 Bootstrap: 9979.0 RASSig_1_RBSig_-1 Counts: 35 1 110 15 Path: 0-1-3 Frequency: 0.0517921354189 Bootstrap: 0.0 Path: 0-2-3 Frequency: 0.948207864581 Bootstrap: 10000.0 PI3K2Sig_1_P53Sig_-1 Counts: 29 1 79 52 Path: 0-1-3 Frequency: 0.0491232034003 Bootstrap: 3.0 Path: 0-2-3 Frequency: 0.9508767966 Bootstrap: 9997.0 P53Sig_-1_RBSig_1 Counts: 24 12 1 15 Path: 0-1-3 Frequency: 0.903594214185 Bootstrap: 9992.0 Path: 0-2-3 Frequency: 0.0964057858147 Bootstrap: 8.0 P53Sig_-1_RBSig_-1 Counts: 24 12 6 119 Path: 0-1-3 Frequency: 0.727911943964 Bootstrap: 9900.0 Path: 0-2-3 Frequency: 0.272088056036 Bootstrap: 100.0 Three-Way List of genes mapped to indices 0 CCND2, CDK2, CDK4, CDKN1B, ERBB3, KRAS, MDM2, PIK3C2G 1 CCNE1 2 CDKN2A, CDKN2B 3 EGFR 4 ERRFI1, PIK3CD 5 MDM4, PIK3C2B 6 PDGFRA 7 PIK3CB 8 PTEN 9 RB1 List of alleles with high marginal frequency: 0 CCNE1_1 1 CDKN2A, CDKN2B_-1 2 CDKN2A, CDKN2B_-2 3 EGFR_1 4 EGFR_2 5 ERRFI1, PIK3CD_-1 6 MDM4, PIK3C2B_1 7 MDM4, PIK3C2B_2 8 PDGFRA_1 9 PDGFRA_2 10 PIK3CB_1 11 PIK3CB_2 12 PTEN_-1 13 PTEN_-2 14 RB1_-1 List of highly correlated alleles with high frequency of mutation: 6 MDM4, PIK3C2B_1 14 RB1_-1 0.00432172720353 2 CDKN2A, CDKN2B_-2 5 ERRFI1, PIK3CD_-1 0.0215225720473 List of interaction sets: Pathway List of genes mapped to networks AKTSig PIK3CB PIK3CD PTEN RASSig PDGFRA ERBB3 EGFR KRAS ERRFI1 PI3K2Sig PIK3C2B PIK3C2G P53Sig CDKN2A MDM2 MDM4 RBSig CDKN1B CDKN2A CDKN2B RB1 CCNE1 CDK2 CDK4 CCND2 List of alleles with high marginal frequency: 0 AKTSig_1 1 AKTSig_-1 2 RASSig_1 3 PI3K2Sig_1 4 P53Sig_-1 5 RBSig_1 6 RBSig_-1 List of highly correlated alleles with high frequency of mutation: List of interaction sets: