ClusterID	MSigDBTerm	P-value	Q-value	Total	Annotated	ClusterSize	AnnotatedInCluster	FoldEnrichment	Hitgenes
Cluster1	_Genes_down-regulated_in_uterus_upon_knockout_of_BMP2_[GeneID=650].	5.19172e-12	2.91255e-09	3870	172	1046	88	1.89293	AASS;ABP1;ACOT11;ASNS;ASS1;BEND3;BLM;BOP1;C13orf33;C2orf40;CCDC86;CCNE1;CCRN4L;CDC6;CDCA7;CHCHD4;CIRH1A;COL14A1;CTPS;DCBLD1;DNAJA4;DPH2;E2F8;EBNA1BP2;FADS3;FAIM;FAM98A;FANCA;FOSL1;HEATR3;HELLS;HMGN5;HSPA8;IARS;LTV1;LY75;MARS;MCM3;MCM4;MCM5;ME1;MFSD2A;MRTO4;MTHFD1;MTHFD1L;MYBBP1A;NLN;NME1;NOP16;NOP58;NQO2;NSUN2;NT5E;PDSS1;PFAS;PINX1;PNO1;POLE2;POLR1A;PSAT1;PSME3;PSPC1;QTRTD1;RRM2;RRP15;RRS1;RTEL1;SHQ1;SLC25A13;SLC30A2;SLC7A1;SRSF3;STEAP1;SYNPO2;TAF4B;TIPIN;TNFRSF12A;TRMT6;TSR1;TTF2;UNC5B;UNG;URB2;UTP20;WDR4;WDR77;YDJC;ZWINT
Cluster1	"_Genes_down-regulated_in_ME-A_cells_(breast_cancer,_sensitive_to_apoptotic_stimuli)_exposed_to_doxorubicin_[PubChem=31703]_in_the_presence_of_medium_concentrate_(MC)_from_ME-C_cells_(breast_cancer,_resistant_to_apoptotic_stimuli)."	2.35899e-07	6.61696e-05	3870	95	1046	49	1.90832	C9orf91;CD44;CDC6;CDCA7;CEBPB;CES1;CGNL1;CHAC2;CYP1B1;EXOSC5;F2RL1;FAAH;FAIM;GRHL2;HELLS;HSPA8;IARS;LANCL2;METTL1;MYBBP1A;NFIB;NOP58;NT5E;OSMR;PDSS1;PIPOX;PLEKHF1;PLP2;PLSCR1;POLR1A;PSMG1;PSMG4;RIPK1;RRP15;RUNX2;SEC24D;SLC25A10;SLC25A13;SOCS2;SRSF2;STAMBPL1;TARS;TK1;TOE1;TOMM40;TRIB3;WDR4;WDR77;ZBED3
Cluster1	_Genes_consistently_down-regulated_in_mammary_stem_cells_both_in_mouse_and_human_species.	6.93238e-07	0.000129636	3870	122	1046	58	1.75893	ACOT4;ANO9;AP1M2;ARHGEF16;BAIAP2L1;C22orf25;CBLC;CD24;CDH1;CEACAM1;CGN;CGNL1;CLDN3;CLDN7;COBL;CRB3;ELL3;ELMO3;EPCAM;ESRP1;FAAH;GRB7;GSTO2;HTATIP2;ICA1;IDO1;ILDR1;ISG20;KIAA1244;KRT18;KRT19;LSR;LTF;MARVELD3;MBOAT1;MFSD7;MLPH;MYO5B;MYO5C;NAT1;OSBPL10;PCBD2;PODXL;PPAP2C;PPM1H;PPP1R1B;PSMB8;PTPN6;RAB25;RBM47;RNASEH2B;SLC5A6;SPINT1;ST14;TBC1D8;TMEM125;TMPRSS2;VIPR1
Cluster1	_Genes_up-regulated_during_later_stage_of_differentiation_of_Oli-Neu_cells_(oligodendroglial_precursor)_in_response_to_PD174265_[PubChemID=4709].	3.00636e-06	0.000421642	3870	107	1046	51	1.76346	BEND3;BLM;BOK;C1orf135;CCNE1;CDC6;CDCA7;DDAH1;DSCC1;FAM195A;FAM54A;FANCA;GPATCH4;HELLS;HMGN5;LANCL2;LARP7;MCM3;MCM4;MCM5;MREG;MYBL2;NFIB;NOP58;OSBPL3;PDSS1;PDZRN3;PKMYT1;PODXL;POLA1;POLE2;PPARGC1B;PTPN6;RRM2;SAMHD1;SEPHS1;SFXN2;SHQ1;SLC25A10;SMPDL3B;SPATS2L;SPPL2A;STAMBPL1;TCF19;TIPIN;TK1;TRMT61A;TTF2;UNG;UPP1;VCAN
Cluster1	_Genes_co-regulated_in_uterus_during_a_time_course_response_to_progesterone_[PubChem=5994]:_SOM_cluster_11.	2.42239e-05	0.00271792	3870	23	1046	16	2.57378	BOP1;CIRH1A;GLI1;GMPPB;LTV1;MARS;METTL1;MRTO4;NOP58;PNO1;PSME3;PUS1;RRS1;SRSF2;SRSF3;TARS
Cluster1	_The_postradiation_tumor_escape_signature:_genes_up-regulated_in_tumors_from_irradiated_stroma_vs_those_from_non-irradiated_stroma.	2.97155e-05	0.0027784	3870	62	1046	32	1.90958	ANXA11;AQP5;ASS1;BNC2;BOP1;CGNL1;CIRH1A;CXCL6;FAM203A;FAM98A;FOSL1;KCNK5;METTL1;MTHFD1;MYBBP1A;MYBL2;ORAOV1;PDZRN3;PMM2;POLR1A;RAMP3;SLC15A3;SLC25A10;SLTM;TEX261;TMCO7;TRMT6;TRMT61A;TSR1;URB2;VCAN;ZNF560
Cluster1	_Genes_down-regulated_in_neural_stem_cells_(NSC)_at_60_h_after_cre-lox_knockout_of_TLX_(NR2E1)_[GeneID=7101].	5.71303e-05	0.00457858	3870	48	1046	26	2.00406	AK4;BLM;CCNE1;CDC6;CDCA7;E2F8;FAM54A;FANCA;LARP7;LTV1;MCM3;MCM4;MCM5;MYBL2;NSUN2;PDZRN3;POLA1;POLE2;RRM2;SRSF3;STC2;TCF19;TIPIN;TK1;UNG;WDR77
Cluster1	_Genes_with_promoters_bound_by_E2F4_[GeneID=1874]_in_unstimulated_hybridoma_cells.	0.000104232	0.00730927	3870	90	1046	41	1.68547	AIMP2;ATP10A;BLM;CD3EAP;CDC6;CDCA7;DARS2;DSCC1;FAM46B;FAM54A;FANCA;HELLS;HIST1H2BJ;HIST1H3G;HIST1H4H;HSPA8;MB21D1;MCM3;MCM4;MCM5;MYBL2;NOP58;NTNG1;POLA1;POLE2;QTRTD1;RNASEH2B;RRM2;RRS1;RTEL1;SHQ1;SLC25A10;STMN3;TAP1;TCF19;TGFB1I1;TIPIN;TOE1;TRMT6;UFD1L;UNG
Cluster1	_Up-regulated_in_hepatocytes_upon_expression_of_NOS2_[GeneID=4843].	0.000237614	0.0127374	3870	11	1046	9	3.02712	CCNE1;HMOX1;HSPA8;KRT19;MCM4;MCM5;NGF;PCNA;SMS
Cluster1	_Selected_gradually_up-regulated_genes_in_the_TLX1_[GeneID=3195]_Tet_On_iEBHX15-4_cells_(pro-erythroblasts).	0.000239906	0.0127374	3870	15	1046	11	2.71319	ANK1;BLM;ELF4;FOXH1;MCM3;MCM4;MCM5;MYBL2;POLA1;POLE2;POU2F3
Cluster1	_Cluster_4:_genes_maximally_expressed_at_16_h_time_point_during_differentiation_of_3T3-L1_fibroblasts_into_adipocytes_in_response_to_adipogenic_hormones.	0.000249754	0.0127374	3870	13	1046	10	2.84601	ASS1;CDC6;CDCA7;EMB;HELLS;MCM3;MCM4;MCM5;RRM2;VCAN
Cluster1	_Genes_with_high-CpG-density_promoters_(HCP)_that_have_no_histone_H3_methylation_marks_in_neural_precursor_cells_(NPC).	0.000274144	0.0128162	3870	259	1046	95	1.35707	AFAP1L1;ANXA11;AP1M2;AQP3;ARHGAP27;ARSJ;ARTN;ASS1;B3GNT3;BSPRY;C19orf66;C1orf38;C3orf64;CAMKV;CBLC;CD164L2;CD83;CDCP1;CHMP4C;CLDN3;CLDN7;COL8A2;CRISPLD2;CTSH;CYGB;DAZL;ESRP2;ESYT3;F11R;F2RL1;FADS3;FADS6;FAM110C;GABRQ;GAL;GALNT6;GIPC2;GNA14;GPR176;GPR64;GPX3;GRHL2;GSDMD;HENMT1;HTATIP2;IGFBP6;IL12RB2;ILDR1;IRF6;IRX4;KCNG1;KCNK13;KRT18;KRT19;KRT7;LAMC2;LRRC15;LTB4R2;LTBR;MAL2;MARVELD2;MARVELD3;MESP2;MMP14;MMP25;MOCOS;MPV17L;MYO5C;MYOCD;NGB;NGF;OLFM2;OSMR;P2RX5;PKP1;PLEKHG6;PPM1J;PPP1R3B;PRDM14;PRKCDBP;PRR15;PTGER2;RASEF;RPP25;SELV;SGK3;SLC1A1;SLC22A4;SLC30A2;SLC34A2;ST14;TACSTD2;TMCO4;TMEM30B;TMPRSS2
Cluster1	_Genes_down-regulated_in_erythroid_progenitor_cells_from_fetal_livers_of_E13.5_embryos_with_KLF1_[GeneID=10661]_knockout_compared_to_those_from_the_wild_type_embryos.	0.000699587	0.0301899	3870	249	1046	90	1.33728	ACAP1;ACSL1;ANXA11;APOBEC3B;ARHGAP4;BCL11A;C16orf54;CARD10;CCDC137;CD44;CD53;CDCA7;CEACAM1;CEBPB;CHCHD4;CHDH;CTSC;DEF6;DOCK2;DSCC1;EBI3;EBNA1BP2;EFHD2;EMB;EXOSC5;FOXO1;GATA2;GPATCH4;HNRNPM;IDH1;ITGA6;KCTD14;LCN2;LDLRAP1;LEMD3;LTF;MAP3K5;MAP7;MB21D1;MBP;MCM4;MFSD6;MGST1;MPP6;MYLIP;NCLN;NME1;NMI;PAPSS2;PDE2A;PFAS;PITPNC1;PKMYT1;PLCL2;PLSCR1;POLE2;POLR1A;PPARGC1B;PSAT1;PSMB10;PSMB8;PSMG1;PYCARD;RABGAP1L;RAP1GAP2;RASSF5;RIPK1;RNASEH2B;RNF144B;RPGRIP1;RRS1;SAMHD1;SGK3;SLA;SMS;SPPL2A;SRSF3;STAMBPL1;SYK;TBC1D8;TCF19;TES;TIPIN;TMEM180;TOE1;TRMT6;TTF2;UGP2;VAV1;YDJC
Cluster1	_Genes_co-regulated_in_uterus_during_a_time_course_response_to_progesterone_[PubChem=5994]:_SOM_cluster_9.	0.000920624	0.0368907	3870	26	1046	15	2.13451	AHR;CBR1;CD24;CD53;CD83;CTSC;EMB;KRT19;NFIB;PSMB8;RAB25;SLC1A1;TES;TMPRSS2;UPK3B
Cluster2	_Genes_with_high-CpG-density_promoters_(HCP)_bearing_histone_H3_dimethylation_at_K4_(H3K4me2)_and_trimethylation_at_K27_(H3K27me3)_in_brain.	0.0306661	0.0306661	3870	612	5	3	3.79412	A4GALT;AVPR1A;OPRD1
Cluster3	_Cluster_1:_genes_up-regulated_in_lung_tissue_samples_from_mice_with_oncogenic_form_of_KRAS_[GeneID=3845]_and_inactivated_PTEN_[GeneID=5728].	0.000233862	0.0481755	3870	54	228	11	3.4576	C8orf42;CALB1;CR1L;DMBT1;GABRA1;GABRP;GRIN1;HSPA2;MPZL2;RAMP1;RNF128
Cluster7	_Genes_down-regulated_during_differentiation_of_Oli-Neu_cells_(oligodendroglial_precursor)_in_response_to_PD174265_[PubChemID=4709].	2.59828e-07	0.000125757	3870	315	801	102	1.56447	ABCA2;AEBP1;ANTXR2;ARHGEF25;ATAT1;BCHE;BMF;BMP1;BNIP3;C1orf96;CACNB3;CADM1;CCNG2;CD82;CDK19;CHD3;CLIP3;CNRIP1;COL4A5;COL4A6;CUBN;DBP;DIXDC1;EBF4;EFHD1;EFR3B;EIF2C4;ENPP2;EPHA7;EPS8;FAM116B;FAM13C;FGFRL1;FMN2;FOXP2;FRMD4B;GALC;GFRA2;GLIS3;GLRB;GRASP;IFI27L2;IGLON5;IGSF11;KALRN;KIAA1462;KIAA1715;KIRREL3;KLHL24;LCORL;LPHN3;LRRC49;LRRC4C;LSAMP;MAF;MAP6;MBNL2;MLLT3;MXI1;MYLK;NCALD;NCAN;NDNF;NKD1;NRCAM;NRTN;PCDH17;PCDH19;PDCD4;PIK3IP1;PIK3R3;PLEKHG1;PLP1;PLXNC1;PMEL;PROS1;PRTG;PURG;RALGDS;RASGEF1B;RFTN2;S100B;SEC16B;SESN3;SIRT2;SLC25A42;SNX30;SRCIN1;ST8SIA1;TET2;TMCC3;TMEM8B;TP53INP1;TPBG;TTC3;TTYH1;TXNIP;ULK2;WLS;ZEB2;ZFHX3;ZNF703
Cluster7	_Genes_down-regulated_in_MEF_cells_(embryonic_fibroblast)_upon_stimulation_with_TGFB1_[GeneID=7040]_for_10_h.	4.07385e-05	0.00985872	3870	114	801	42	1.78001	ADHFE1;ANGPT2;AQP1;ARNT2;CDH2;CLIP4;DBP;DIRAS2;DIXDC1;EPHA7;EYA1;EYA4;FOXP2;GAS1;GAS2;GSTM2;IFIT1;IL6ST;KLHL24;LUM;MAP2;MLLT3;MUM1L1;PCDH9;PIK3R1;PIK3R3;PLEKHG1;PMP22;PPP1R3C;PTX3;RARB;RCBTB2;S1PR3;SEMA3A;SESN3;SLC16A4;STMN2;TCEA3;VCAM1;ZFHX4;ZNF467;ZNF521
Cluster7	_Genes_with_low-CpG-density_promoters_(LCP)_bearing_histone_H3_trimethylation_mark_at_K4_(H3K4me3)_in_neural_progenitor_cells_(NPC).	0.000130795	0.0211016	3870	149	801	50	1.6213	ABCA8;ADAMTS12;ADAMTS6;ADCY6;ADHFE1;AGT;ANGPT2;BCHE;C8orf4;CAMK1G;CD99L2;CDKN2C;CNTNAP1;COL4A5;CSRNP3;CTSO;DLG4;FAM115A;FBXO16;FLRT3;GNG2;GPER;GPR173;GRM3;KCNA4;KDM6B;LIX1;LOXL3;LRRC4B;LRRC4C;MAPK10;MBNL2;NCAN;NCKAP5;NDP;PCDH9;PTN;RFTN2;RIN2;S100B;SCRG1;SEC16B;SEMA3A;SLITRK6;SOX5;SRGAP3;THBS3;TXLNB;VCAM1;ZEB2
Cluster10	"_Genes_up-regulated_in_NIH3T3_cells_(fibroblasts)_transfrormed_by_expression_of_constitutively_active_(Q63L)_form_of_RHOA_[GeneID=387]_off_plasmid_vector;_their_expression_did_NOT_reverted_completely_after_treatment_with_Y27632_[PubChem=123862],_an_inhibitor_of_ROCK_proteins."	0.000102833	0.0261195	3870	14	239	6	6.93963	GBE1;HSD17B11;NGEF;NR1D2;PDGFRA;PRRX2
Cluster17	_Genes_down-regulated_in_hematopoietic_precursor_cells_conditionally_expressing_HOXA9_and_MEIS1_[GeneID=3205;4211].	0.00160089	0.0236882	3870	33	28	3	12.5649	ANXA1;FGR;MITF
Cluster17	_Genes_down-regulated_in_ES_(embryonic_stem_cells)_with_defficient_SUZ12_[GeneID=23512].	0.00263203	0.0236882	3870	137	28	5	5.04432	ANXA1;IER3;PLK2;PLOD2;TAGLN2
Cluster17	_Cluster_2:_late_ATM_[GeneID=472]_dependent_genes_induced_by_ionizing_radiation_treatment.	0.00591528	0.0354917	3870	52	28	3	7.9739	ANXA1;PLK2;TAGLN2
Cluster18	_Genes_forming_the_macrophage-enriched_metabolic_network_(MEMN)_claimed_to_have_a_causal_relationship_with_the_metabolic_syndrom_traits.	0.00908485	0.00908485	3870	396	5	3	5.86364	BGN;CLCNKB;CTSK
Cluster33	_Genes_up-regulated_in_MEF_cells_(embryonic_fibroblast)_upon_stimulation_with_TGFB1_[GeneID=7040]_for_10_h.	0.000325999	0.000651997	3870	101	6	3	19.1584	ADAM12;HK2;LMO1
Cluster34	_Genes_down-regulated_in_SEND_cells_(skin_endothelium)_at_hypoxia_with_ELK3_[GeneID=2004]_knockdown_by_RNAi.	0.000478749	0.0330337	3870	65	61	6	5.85624	ALDH1L2;CYR61;EDN1;IL6;KLF4;MYC
Cluster34	_Cluster_2:_genes_maximally_expressed_at_2_h_time_point_during_differentiation_of_3T3-L1_fibroblasts_into_adipocytes_(cluster_2)_in_response_to_adipogenic_hormones.	0.00127887	0.0441211	3870	31	61	4	8.18614	CYR61;IL6;KLF4;MYC
Cluster39	_Genes_down-regulated_in_ES_(embryonic_stem_cells)_with_defficient_SUZ12_[GeneID=23512].	0.00127558	0.030614	3870	137	24	5	5.88504	ANXA2;COL1A1;PRICKLE1;PRNP;S100A10
Cluster39	_Transcripts_depleted_in_pseudopodia_of_NIH/3T3_cells_(fibroblast)_in_response_to_the_chemotactic_migration_stimulus_by_lysophosphatidic_acid_(LPA)_[PubChem=3988].	0.00268118	0.0321741	3870	97	24	4	6.64948	PDIA5;PRNP;S100A10;TRPS1
Cluster39	_Genes_up-regulated_in_pancreatic_cells_from_mice_with_double_knockout_of_E2F1_[GeneID=1869]_and_E2F2_[GeneID=1870]_compared_to_wild_type.	0.0046838	0.0367793	3870	56	24	3	8.63839	ANXA2;COL1A1;S100A10
Cluster39	_Genes_up-regulated_in_the_urogenital_sinus_(UGS)_of_day_E16_females_exposed_to_the_androgen_dihydrotestosterone_[PubChem=10635]_for_48_h.	0.00723794	0.0367793	3870	204	24	5	3.95221	CEBPD;CLDN4;LANCL3;MT2A;N4BP2L1
Cluster39	_Genes_up-regulated_during_pubertal_mammary_gland_development_between_week_4_and_5.	0.00766235	0.0367793	3870	130	24	4	4.96154	ALDOC;CLDN4;TRPS1;WFDC2
Cluster39	_Genes_up-regulated_at_the_peak_of_an_antigen_response_of_naive_CD8+_[GeneID=925;926]_T-cells.	0.011756	0.0470239	3870	78	24	3	6.20192	ANXA2;MT2A;S100A10
Cluster41	_Genes_down-regulated_both_in_group_C_and_D_of_tumors_arising_from_overexpression_of_BCL2L1_and_MYC_[GeneID=598;4609]_in_plasma_cells.	0.00451974	0.00961764	3870	90	15	3	8.6	IL13RA1;RAB3D;SEPP1
Cluster41	_Up-regualted_genes_from_the_set_F_(Fig._5a):_specific_signature_shared_by_cells_expressing_AF4-MLL_[GeneID=4299;4297]_alone_and_those_expressing_both_AF4-MLL_and_MLL-AF4_fusion_proteins.	0.00480882	0.00961764	3870	92	15	3	8.41304	LIFR;SEPP1;TOX
Cluster44	_Genes_up-regulated_in_MEF_cells_(embryonic_fibroblast)_upon_stimulation_with_TGFB1_[GeneID=7040]_for_10_h.	0.00319823	0.00639647	3870	101	12	3	9.57921	CMKLR1;CSPG4;FGF18
Cluster52	_Genes_down-regulated_during_prostate_cancer_progression_in_the_JOCK1_model_due_to_inducible_activation_of_FGFR1_[GeneID=2260]_gene_in_prostate.	0.000820087	0.00164017	3870	138	6	3	14.0217	AFAP1L2;APOF;NDRG1
Cluster54	_Genes_down-regulated_in_apoptotic_tissues_(neuroepithelium)_after_MDM4_[GeneID=4194]_knockout.	4.01481e-05	0.0031111	3870	87	76	9	5.2677	DMRTA2;FSTL5;GREM2;JAM2;NEUROD1;NEUROG1;ST18;TBR1;UNCX
Cluster54	_Genes_down-regulated_in_reverted_NIH3T3_cells_(fibroblasts_transformed_by_activated_KRAS_[GeneID=3845]_which_then_reverted_to_normal_cells_upon_stable_over-expression_of_a_dominant_negative_form_of_CDC25_[GeneID=5923])_vs_normal_fibroblasts.	8.1236e-05	0.0031111	3870	55	76	7	6.48086	BAIAP2;COL11A1;COL5A2;DUSP1;EBF3;NDRG4;TIMP3
Cluster54	_Genes_down-regulated_in_transformed_NIH3T3_cells_(fibroblasts_transformed_by_activated_KRAS_[GeneID=3845])_vs_normal_cells.	0.000102564	0.0031111	3870	57	76	7	6.25346	COL11A1;COL5A2;DUSP1;EBF3;KAZALD1;NDRG4;TIMP3
Cluster54	_Genes_down-regulated_in_9.5_days_post_coitus_(dpc)_embryos_with_COMMD1_[GeneID=150684]_knockout_and_in_normal_8.5_dpc_embryos_compared_to_normal_9.5_dpc_embryos.	0.000791118	0.0179979	3870	10	76	3	15.2763	COL3A1;NEUROD1;TPPP3
Cluster54	_Selected_genes_down-regulated_during_invasion_of_lymphatic_vessels_during_metastasis.	0.00127069	0.0231266	3870	25	76	4	8.14737	COL3A1;COL5A2;JAM2;LTBP2
Cluster54	_Genes_up-regulated_in_primary_B_lymphocytes_engineered_to_overexpress_BCL2_[GeneID=12043].	0.00180702	0.0274064	3870	13	76	3	11.751	BCL2;RELN;SOSTDC1
Cluster54	_Genes_with_high-CpG-density_promoters_(HCP)_bearing_histone_H3_trimethylation_mark_at_K27_(H3K27me3)_in_MEF_cells_(embryonic_fibroblast).	0.00253482	0.0329527	3870	347	76	15	2.2012	CDH20;DOC2B;INSM2;KCNH7;LY6H;NEUROD1;NEUROG1;NR4A3;PSD;RELN;SNAP25;SST;TMEM130;UNCX;WNT7A
Cluster54	"_Genes_changed_in_NIH_3T3_cells_(embryonic_fibroblast)_by_expression_of_one_or_more_of_C/EBP_proteins:_CEBPA,_CEBPB,_CEBPG,__and_CEBPD_[GeneID=1050;1051;1054;1052]."	0.00382014	0.0410539	3870	54	76	5	4.71491	BAIAP2;DUSP1;GREM2;HGF;JUNB
Cluster54	_Genes_down-regulated_in_SEND_cells_(skin_endothelium)_at_hypoxia_after_knockdown_of_ELK3_[GeneID=2004]_and_HIF1A_[GeneID=3091]_by_RNAi.	0.00406028	0.0410539	3870	17	76	3	8.98607	ARL4C;SETD7;TMEM176A
Cluster55	_Genes_with_high-CpG-density_promoters_(HCP)_bearing_histone_H3_dimethylation_mark_at_K4_(H3K4me2)_in_neural_precursor_cells_(NPC).	0.00487144	0.00487144	3870	255	6	3	7.58824	CACNA1B;CPLX2;MTUS2
Cluster61	_Selected_gradually_up-regulated_genes_whose_expression_profile_follows_that_of_HEMGN_[GeneID=55363]_in_the_TLX1_[GeneID=3195]_Tet_On_iEBHX15-4_cells_(pro-erythroblasts).	0.00083454	0.0166908	3870	17	44	3	15.5214	FOSB;HOXA2;TAL2
Cluster70	_Genes_with_promoters_bound_by_E2F4_[GeneID=1874]_in_unstimulated_hybridoma_cells.	1.20829e-05	0.000628309	3870	90	80	10	5.375	C12orf4;CDC45;CENPM;DGCR8;DHFR;E2F1;ESCO2;GINS3;HIST2H3C;SFPQ
Cluster70	_Genes_up-regulated_during_later_stage_of_differentiation_of_Oli-Neu_cells_(oligodendroglial_precursor)_in_response_to_PD174265_[PubChemID=4709].	5.58364e-05	0.00145175	3870	107	80	10	4.52103	APITD1;CCNE2;CDC45;CENPM;CHAF1B;DHFR;E2F1;ESCO2;GINS2;STS
Cluster84	_Genes_with_high-CpG-density_promoters_(HCP)_bearing_histone_H3_dimethylation_mark_at_K4_(H3K4me2)_and_trimethylation_mark_at_K27_(H3K27me3)_in_neural_precursor_cells_(NPC).	0.00791162	0.021078	3870	216	15	4	4.77778	ANKRD63;FOXE1;MAFA;SLC6A17
Cluster84	_Genes_up-regulated_during_prostate_cancer_progression_in_the_JOCK1_model_due_to_inducible_activation_of_FGFR1_[GeneID=2260]_gene_in_prostate.	0.010539	0.021078	3870	122	15	3	6.34426	ARAP2;CDKN2B;SLC41A2
Cluster88	_Genes_down-regulated_in_9.5_days_post_coitus_(dpc)_embryos_with_COMMD1_[GeneID=150684]_knockout_and_in_normal_8.5_dpc_embryos_compared_to_normal_9.5_dpc_embryos.	0.00033795	0.0141939	3870	10	57	3	20.3684	FABP7;RSPO1;TTPA
Cluster90	_Genes_consistently_down-regulated_in_mammary_stem_cells_both_in_mouse_and_human_species.	0.00127512	0.0076507	3870	122	16	4	7.93033	HPN;MB;MYH14;TLR3
Cluster90	_Genes_down-regulated_in_mice_with_skin_specific_knockout_of_RB1_[GeneID=5925]_by_Cre-lox.	0.00331328	0.00993985	3870	158	16	4	6.12342	KLK10;LITAF;MYH14;TNMD
Cluster90	_Genes_down-regulated_in_mice_with_skin_specific_double_knockout_of_both_RB1_and_TP53_[GeneID=5925;7157]_by_Cre-lox.	0.0334481	0.0498165	3870	176	16	3	4.12287	KLK10;MYH14;TNMD
Cluster90	_Genes_down-regulated_in_mice_with_skin_specific_knockout_of_TP53_[GeneID=7157].	0.0339387	0.0498165	3870	177	16	3	4.09958	KLK10;MYH14;TNMD
Cluster90	_Genes_up-regulated_in_uterus_upon_knockout_of_BMP2_[GeneID=650].	0.0415138	0.0498165	3870	330	16	4	2.93182	C14orf132;FAM65B;GRB14;HSPA12B
Cluster93	_All_significantly_down-regulated_genes_in_kidney_glomeruli_isolated_from_TCF21_[Gene_ID=6943]_knockout_mice.	0.000189378	0.0128777	3870	252	56	12	3.29082	CALCRL;COL25A1;CTGF;DTNA;FLI1;IRF2BP2;MAN1A1;MMP23B;PARD3B;PDE4D;PPM1K;WWTR1
Cluster93	_Genes_with_promoters_bound_by_FOXP3_[GeneID=50943]_and_which_are_up-regulated_only_in_developing_(located_in_the_thymus)_regulatory_CD4+_[GeneID=920]_T_lymphocytes.	0.000416014	0.0130525	3870	45	56	5	7.67857	CNOT6L;ELK3;ERRFI1;KLF6;MAN1A1
Cluster93	"_Genes_up-regulated_in_anergic_mouse_T_helper_cells_(A.E7),_versus_non-anergic_stimulated_controls"	0.000814895	0.0130525	3870	30	56	4	9.21429	DLG2;DTNA;KIFC3;TNFSF9
Cluster93	_Genes_down-regulated_in_3T3_cells_(fibroblast)_upon_activation_of_JNK_pathway.	0.000933278	0.0130525	3870	14	56	3	14.8087	COL6A1;CP;IFITM1
Cluster93	_The_postradiation_tumor_escape_signature:_genes_down-regulated_in_tumors_from_irradiated_stroma_vs_those_from_non-irradiated_stroma.	0.000959744	0.0130525	3870	111	56	7	4.35811	CNOT6L;COL6A1;CP;CTGF;ERRFI1;KLF6;SERTAD4
Cluster93	_Genes_up-regulated_in_response_to_both_single_dose_and_fractionated_radiation_that_were_common_to_all_three_cell_lines_studied.	0.002008	0.0219305	3870	18	56	3	11.5179	COL6A1;CTGF;IFITM1
Cluster93	_Genes_up-regulated_by_hypoxia_in_TRAMP-C_cells_(prostatic_cancer).	0.00225755	0.0219305	3870	65	56	5	5.31593	EFNA1;KDELR3;P4HA2;PGM1;TNFSF9
Cluster93	_Genes_down-regulated_in_group_C_of_tumors_arising_from_overexpression_of_BCL2L1_and_MYC_[GeneID=598;4609]_in_plasma_cells.	0.00274836	0.0233611	3870	20	56	3	10.3661	ATXN1;KLF6;PDE4D
Cluster94	_Genes_down-regulated_in_SEND_cells_(skin_endothelium)_at_hypoxia_after_knockdown_of_HIF1A_[GeneID=3091]_by_RNAi.	0.00144484	0.00765338	3870	50	18	3	12.9	BHLHE40;VEGFA;ZFP36
Cluster94	_Molecular_timetable_composed_of_162_time-indicating_genes_(182_probes)_in_the_peripheral_(liver)_clock.	0.00153068	0.00765338	3870	51	18	3	12.6471	BHLHE40;LGALS9;TFPI2
Cluster94	_Genes_down-regulated_in_SEND_cells_(skin_endothelium)_at_hypoxia_with_ELK3_[GeneID=2004]_knockdown_by_RNAi.	0.0030822	0.010274	3870	65	18	3	9.92308	BHLHE40;VEGFA;ZFP36
Cluster94	_Up-regulated_genes_that_best_disciminate_plasmablastic_plasmacytoma_from_plasmacytic_plasmacytoma_tumors.	0.00679276	0.0169819	3870	86	18	3	7.5	BHLHE40;LGALS9;PHLDA2
Cluster94	_Genes_up-regulated_in_MEF_cells_(embryonic_fibroblast)_with_double_knockout_of_the_translation_repressors_4EBP1_[GeneID=1978]_and_4EBP2_[GeneID=1979].	0.00894942	0.0176471	3870	95	18	3	6.78947	BHLHE40;EGFL6;LGALS9
Cluster94	_Genes_up-regulated_in_MEF_cells_(embryonic_fibroblast)_upon_stimulation_with_TGFB1_[GeneID=7040]_for_10_h.	0.0105883	0.0176471	3870	101	18	3	6.38614	BHLHE40;TFPI2;VEGFA
Cluster104	_Genes_down-regulated_in_the_Kras2LA_mouse_lung_cancer_model_with_mutated_KRAS_[GeneID=3845].	0.00718187	0.0143637	3870	184	9	3	7.01087	CD93;IFIT3;LOX
Cluster115	_Genes_with_high-CpG-density_promoters_(HCP)_bearing_histone_H3_trimethylation_mark_at_K27_(H3K27me3)_in_MEF_cells_(embryonic_fibroblast).	0.00623154	0.00623154	3870	347	5	3	6.69164	BARHL1;DLGAP2;GRID1
Cluster128	_Genes_up-regulated_in_the_mouse_model_of_acute_lung_injury_induced_by_inhaling_nickel_sulfate_[PubChem=24586].	0.000102996	0.00123595	3870	25	15	3	30.96	CDKN1A;MAL;SPHK1
Cluster128	_Genes_up-regulated_in_MEF_cells_(embryonic_fibroblast)_expressing_~25%_of_YY1_[GeneID=7528].	0.00397428	0.0238457	3870	86	15	3	9	CDKN1A;ID4;MAL
Cluster128	_Genes_consistently_up-regulated_in_mammary_stem_cells_both_in_mouse_and_human_species.	0.0107856	0.0425869	3870	236	15	4	4.37288	CDKN1A;ID4;IGFBP2;SPHK1
Cluster128	_Genes_up-regulated_in_erythroid_progenitor_cells_from_fetal_livers_of_E13.5_embryos_with_KLF1_[GeneID=10661]_knockout_compared_to_those_from_the_wild_type_embryos.	0.0181038	0.0425869	3870	149	15	3	5.19463	CX3CL1;IGFBP2;VTN
Cluster128	_Genes_down-regulated_in_mice_with_skin_specific_knockout_of_RB1_[GeneID=5925]_by_Cre-lox.	0.0211605	0.0425869	3870	158	15	3	4.89873	CDKN1A;IGFBP2;ODZ2
Cluster128	_Genes_with_high-CpG-density_promoters_(HCP)_bearing_histone_H3_dimethylation_at_K4_(H3K4me2)_and_trimethylation_at_K27_(H3K27me3)_in_brain.	0.0212935	0.0425869	3870	612	15	6	2.52941	ID4;IGDCC3;IGFBP2;MAL;OAF;ONECUT1
Cluster128	_Genes_down-regulated_in_mice_with_skin_specific_double_knockout_of_both_RB1_and_TP53_[GeneID=5925;7157]_by_Cre-lox.	0.0280942	0.0427674	3870	176	15	3	4.39773	CDKN1A;IGFBP2;ODZ2
Cluster128	_Genes_down-regulated_in_mice_with_skin_specific_knockout_of_TP53_[GeneID=7157].	0.0285116	0.0427674	3870	177	15	3	4.37288	CDKN1A;IGFBP2;ODZ2
Cluster131	_Genes_up-regulated_during_skin_tumor_progression_from_normal_skin_to_high_risk_papilloma.	0.00173108	0.0199074	3870	38	25	3	12.2211	CXCL16;FAM162A;HRC
Cluster131	_Genes_up-regulated_in_squamous_cell_carcinoma_(SCC)_compared_to_normal_skin.	0.00173108	0.0199074	3870	38	25	3	12.2211	CXCL16;FAM162A;HRC
Cluster131	_Genes_up-regulated_in_mice_with_skin_specific_knockout_of_RB1_[GeneID=5925]_by_Cre-lox.	0.00400354	0.0306938	3870	170	25	5	4.55294	C19orf21;COL6A2;JAK1;MASP1;SULT2B1
Cluster131	_Genes_up-regulated_in_SEND_cells_(skin_endothelium)_at_hypoxia_after_knockdown_of_ELK3_[GeneID=2004]_and_HIF1A_[GeneID=3091]_by_RNAi.	0.00868855	0.0499592	3870	67	25	3	6.93134	ETS1;FAM162A;PGF
Cluster132	_Genes_with_high-CpG-density_promoters_(HCP)_bearing_histone_H3_trimethylation_mark_at_K27_(H3K27me3)_in_MEF_cells_(embryonic_fibroblast).	0.000295535	0.000295535	3870	347	5	4	8.92219	CABP7;HRK;TAL1;VSTM2B
Cluster144	_Genes_with_high-CpG-density_promoters_(HCP)_bearing_the_H3K27_tri-methylation_(H3K27me3)_mark_in_brain.	0.00225483	0.0113816	3870	143	26	5	5.20441	COL13A1;FOXB2;IRX2;PHOX2A;TDRD6
Cluster144	_Genes_with_high-CpG-density_promoters_(HCP)_bearing_histone_H3_dimethylation_mark_at_K4_(H3K4me2)_and_trimethylation_mark_at_K27_(H3K27me3)_in_neural_precursor_cells_(NPC).	0.00252924	0.0113816	3870	216	26	6	4.13462	COL13A1;FIBCD1;FOXB2;PRPH;SCN4B;WSCD2
Cluster144	_Genes_with_high-CpG-density_promoters_(HCP)_bearing_histone_H3_trimethylation_mark_at_K27_(H3K27me3)_in_neural_progenitor_cells_(NPC).	0.00890205	0.0267062	3870	197	26	5	3.77782	COL13A1;FIBCD1;FOXB2;PRPH;SCN4B
Cluster144	_Cluster_PAM4:_genes_down-regulated_in_hepatocellular_carcinoma_(HCC)_vs_normal_liver_tissue_from_mice_deficient_for_TXNIP_[GeneID=10628].	0.0127266	0.0286348	3870	74	26	3	6.0343	MAGIX;OLIG1;SLC6A12
Cluster214	_Genes_with_high-CpG-density_promoters_(HCP)_bearing_histone_H3_trimethylation_mark_at_K27_(H3K27me3)_in_MEF_cells_(embryonic_fibroblast).	0.00623154	0.00623154	3870	347	5	3	6.69164	GOLGA7B;GRIA2;ONECUT3
Cluster233	_Category_A_genes:_p53-dependent_genes_whose_expression_in_the_absence_of_S389_phosphorylation_is_similar_to_loss_of_TP53_[GeneID=7157]_in_MEF_(embryonic_fibroblast)_cells_in_response_to_UV-C_irradiation.	0.00438215	0.00438215	3870	307	5	3	7.56352	ENTPD8;INHBB;MATN3