CSMET: Comparative Genomic Motif Detection via Multi-Resolution Phylogenetic Shadowing

Open Access

Peer-reviewed

Research Article

Pradipta Ray ,

Contributed equally to this work with: Pradipta Ray, Suyash Shringarpure

Affiliation School of Computer Science, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America
⨯
Suyash Shringarpure ,

Contributed equally to this work with: Pradipta Ray, Suyash Shringarpure

Affiliation School of Computer Science, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America
⨯
Mladen Kolar,

Affiliation School of Computer Science, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America
⨯
Eric P. Xing

* E-mail: eric.xing@gmail.com

Affiliation School of Computer Science, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America
⨯

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Sequence motif analysis
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Phylogenetic analysis
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Sequence alignment
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Phylogenetics
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Multiple alignment calculation
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Algorithms
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Drosophila melanogaster
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Nucleotides
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