An Evolutionary Model-Based Algorithm for Accurate Phylogenetic Breakpoint Mapping and Subtype Prediction in HIV-1

• Sergei L. Kosakovsky Pond ,

  * E-mail: spond@ucsd.edu

  Affiliation Department of Medicine, University of California San Diego, La Jolla, California, United States of America

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• David Posada,

  Affiliation Department of Biochemistry, Genetics and Immunology, University of Vigo, Vigo, Spain

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• Eric Stawiski,

  Affiliation Monogram Biosciences, South San Francisco, California, United States of America

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• Colombe Chappey,

  Affiliation Monogram Biosciences, South San Francisco, California, United States of America

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• Art F.Y. Poon,

  Affiliation Department of Pathology, University of California San Diego, La Jolla, California, United States of America

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• Gareth Hughes,

  Affiliation Health Protection Agency East of England Regional Epidemiology Unit, Cambridge, United Kingdom

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• Esther Fearnhill,

  Affiliation Medical Research Council Clinical Trials Unit, London, United Kingdom

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• Mike B. Gravenor,

  Affiliation School of Medicine, University of Swansea, Swansea, United Kingdom

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• Andrew J. Leigh Brown,

  Affiliation Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, United Kingdom

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• Simon D.W. Frost

  Affiliations Department of Pathology, University of California San Diego, La Jolla, California, United States of America, Department of Veterinary Medicine, University of Cambridge, Cambridge, United Kingdom

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