DNA Familial Binding Profiles Made Easy: Comparison of Various Motif Alignment and Clustering Strategies

• Shaun Mahony ,

  *To whom correspondence should be addressed. E-mail: shaun.mahony@ccbb.pitt.edu (SM); benos@pitt.edu (PVB)

  Affiliations Department of Computational Biology, School of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America , Department of Computer Science, Faculty of Arts and Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America

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• Philip E Auron,

  Affiliations Department of Biological Sciences, Duquesne University, Pittsburgh, Pennsylvania, United States of America , Department of Molecular Genetics and Biochemistry, School of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America

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• Panayiotis V Benos

  *To whom correspondence should be addressed. E-mail: shaun.mahony@ccbb.pitt.edu (SM); benos@pitt.edu (PVB)

  Affiliations Department of Computational Biology, School of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America , Department of Human Genetics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America , University of Pittsburgh Cancer Institute, School of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America

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