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Research Article

A Semi-Supervised Method for Predicting Transcription Factor–Gene Interactions in Escherichia coli

  • Jason Ernst,

    Affiliation: Machine Learning Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America

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  • Qasim K. Beg,

    Affiliation: Department of Pathology, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America

    Current address: Department of Biomedical Engineering, Boston University, Boston, Massachusetts, United States of America

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  • Krin A. Kay,

    Affiliation: Department of Pathology, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America

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  • Gábor Balázsi,

    Affiliation: Department of Systems Biology, University of Texas M. D. Anderson Cancer Center, Houston, Texas, United States of America

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  • Zoltán N. Oltvai,

    Affiliation: Department of Pathology, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America

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  • Ziv Bar-Joseph mail

    zivbj@cs.cmu.edu

    Affiliation: Machine Learning Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America

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  • Published: March 28, 2008
  • DOI: 10.1371/journal.pcbi.1000044

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