Fast Mapping of Short Sequences with Mismatches, Insertions and Deletions Using Index Structures

• Steve Hoffmann,

  Affiliations Bioinformatics Group, Department of Computer Science, University of Leipzig, Leipzig, Germany, Interdisciplinary Center for Bioinformatics, University of Leipzig, Leipzig, Germany

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• Christian Otto,

  Affiliation Bioinformatics Group, Department of Computer Science, University of Leipzig, Leipzig, Germany

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• Stefan Kurtz,

  Affiliation Center for Bioinformatics, University of Hamburg, Hamburg, Germany

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• Cynthia M. Sharma,

  Affiliation Max Planck Institute for Infection Biology, Berlin, Germany

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• Philipp Khaitovich,

  Affiliation Comparative Biology Group, Partner-Institute for Computational Biology, Shanghai, China

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• Jörg Vogel,

  Affiliation Max Planck Institute for Infection Biology, Berlin, Germany

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• Peter F. Stadler,

  Affiliations Bioinformatics Group, Department of Computer Science, University of Leipzig, Leipzig, Germany, Interdisciplinary Center for Bioinformatics, University of Leipzig, Leipzig, Germany, RNomics Group, Fraunhofer Institute for Cell Therapy and Immunology IZI, Leipzig, Germany, Santa Fe Institute, Santa Fe, New Mexico, United States of America, Department of Theoretical Chemistry, University of Vienna, Vienna, Austria, Max-Planck-Institute for Mathematics in Sciences, Leipzig, Germany

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• Jörg Hackermüller

  * E-mail: joerg.hackermueller@izi.fraunhofer.de

  Affiliation RNomics Group, Fraunhofer Institute for Cell Therapy and Immunology IZI, Leipzig, Germany

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