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Research Article

Constraint-Based Model of Shewanella oneidensis MR-1 Metabolism: A Tool for Data Analysis and Hypothesis Generation

  • Grigoriy E. Pinchuk equal contributor mail,

    equal contributor Contributed equally to this work with: Grigoriy E. Pinchuk, Jennifer L. Reed

    reed@engr.wisc.edu (JLR); grigoriy.pinchuk@pnl.gov (GEP)

    Affiliation: Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, United States of America

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  • Eric A. Hill,

    Affiliation: Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, United States of America

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  • Oleg V. Geydebrekht,

    Affiliation: Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, United States of America

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  • Jessica De Ingeniis,

    Affiliation: Burnham Institute for Medical Research, La Jolla, California, United States of America

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  • Xiaolin Zhang,

    Affiliation: Department of Chemical and Biological Engineering, University of Wisconsin-Madison, Madison, Wisconsin, United States of America

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  • Andrei Osterman,

    Affiliation: Burnham Institute for Medical Research, La Jolla, California, United States of America

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  • James H. Scott,

    Affiliation: Department of Earth Sciences, Dartmouth College, Hanover, New Hampshire, United States of America

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  • Samantha B. Reed,

    Affiliation: Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, United States of America

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  • Margaret F. Romine,

    Affiliation: Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, United States of America

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  • Allan E. Konopka,

    Affiliation: Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, United States of America

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  • Alexander S. Beliaev,

    Affiliation: Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, United States of America

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  • Jim K. Fredrickson,

    Affiliation: Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, United States of America

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  • Jennifer L. Reed equal contributor mail

    equal contributor Contributed equally to this work with: Grigoriy E. Pinchuk, Jennifer L. Reed

    reed@engr.wisc.edu (JLR); grigoriy.pinchuk@pnl.gov (GEP)

    Affiliation: Department of Chemical and Biological Engineering, University of Wisconsin-Madison, Madison, Wisconsin, United States of America

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  • Published: June 24, 2010
  • DOI: 10.1371/journal.pcbi.1000822

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