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Research Article

Phyletic Profiling with Cliques of Orthologs Is Enhanced by Signatures of Paralogy Relationships

  • Nives Škunca mail,

    skuncan@inf.ethz.ch

    Affiliations: ETH Zurich, Computer Science, Zurich, Switzerland, Swiss Institute of Bioinformatics, Zurich, Switzerland, Ruđer Bošković Institute, Division of Electronics, Zagreb, Croatia

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  • Matko Bošnjak,

    Affiliation: Ruđer Bošković Institute, Division of Electronics, Zagreb, Croatia

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  • Anita Kriško,

    Affiliation: Mediterranean Institute for Life Sciences, Split, Croatia

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  • Panče Panov,

    Affiliation: Jozef Stefan Institute, Department of Knowledge Technologies, Ljubljana, Slovenia

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  • Sašo Džeroski,

    Affiliations: Jozef Stefan Institute, Department of Knowledge Technologies, Ljubljana, Slovenia, Jozef Stefan International Postgraduate School, Ljubljana, Slovenia, Centre of Excellence for Integrated Approaches in Chemistry and Biology of Proteins, Ljubljana, Slovenia

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  • Tomislav Šmuc,

    Affiliation: Ruđer Bošković Institute, Division of Electronics, Zagreb, Croatia

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  • Fran Supek

    Affiliation: Ruđer Bošković Institute, Division of Electronics, Zagreb, Croatia

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  • Published: January 03, 2013
  • DOI: 10.1371/journal.pcbi.1002852

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