Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data

• Chao Cheng,

  Affiliations Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut, United States of America, Program in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut, United States of America

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• Koon-Kiu Yan,

  Affiliations Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut, United States of America, Program in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut, United States of America

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• Woochang Hwang,

  Affiliation Wilmer Institute, Johns Hopkins University School of Medicine, Baltimore, Maryland, United States of America

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• Jiang Qian,

  Affiliation Wilmer Institute, Johns Hopkins University School of Medicine, Baltimore, Maryland, United States of America

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• Nitin Bhardwaj,

  Affiliations Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut, United States of America, Program in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut, United States of America

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• Joel Rozowsky,

  Affiliations Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut, United States of America, Program in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut, United States of America

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• Zhi John Lu,

  Affiliations Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut, United States of America, Program in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut, United States of America

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• Wei Niu,

  Affiliation Department of Genetics, Yale University, New Haven, Connecticut, United States of America

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• Pedro Alves,

  Affiliation Program in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut, United States of America

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• Masaomi Kato,

  Affiliation Department of Molecular Cellular Developmental Biology, Yale University, New Haven, Connecticut, United States of America

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• Michael Snyder,

  Affiliation Department of Genetics, Stanford University, Stanford, California, United States of America

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• Mark Gerstein

  * E-mail: mark.gerstein@yale.edu

  Affiliations Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut, United States of America, Program in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut, United States of America, Department of Computer Science, Yale University, New Haven, Connecticut, United States of America

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