A Digital Framework to Build, Visualize and Analyze a Gene Expression Atlas with Cellular Resolution in Zebrafish Early Embryogenesis

• Carlos Castro-González,

  Affiliations Biomedical Image Technologies, ETSIT, Universidad Politécnica de Madrid, CEIMoncloa, Madrid, Spain, Research Center in Bioengineering, Biomaterials and Nanomedicine (CIBER-BBN), Madrid, Spain, Madrid-MIT M+Visión Consortium, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America

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• Miguel A. Luengo-Oroz,

  Affiliations Biomedical Image Technologies, ETSIT, Universidad Politécnica de Madrid, CEIMoncloa, Madrid, Spain, Research Center in Bioengineering, Biomaterials and Nanomedicine (CIBER-BBN), Madrid, Spain

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• Louise Duloquin,

  Affiliations MDAM UPR3294, Institut de Neurobiologie Alfred Fessard, CNRS, Gif-sur-Yvette, France, Institut des Systèmes Complexes, Paris, France, BioEmergences-IBiSA, Institut de Neurobiologie Alfred Fessard, CNRS, Gif-sur-Yvette, France

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• Thierry Savy,

  Affiliations MDAM UPR3294, Institut de Neurobiologie Alfred Fessard, CNRS, Gif-sur-Yvette, France, Institut des Systèmes Complexes, Paris, France, BioEmergences-IBiSA, Institut de Neurobiologie Alfred Fessard, CNRS, Gif-sur-Yvette, France

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• Barbara Rizzi,

  Affiliations MDAM UPR3294, Institut de Neurobiologie Alfred Fessard, CNRS, Gif-sur-Yvette, France, Institut des Systèmes Complexes, Paris, France, BioEmergences-IBiSA, Institut de Neurobiologie Alfred Fessard, CNRS, Gif-sur-Yvette, France

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• Sophie Desnoulez,

  Affiliations MDAM UPR3294, Institut de Neurobiologie Alfred Fessard, CNRS, Gif-sur-Yvette, France, BioEmergences-IBiSA, Institut de Neurobiologie Alfred Fessard, CNRS, Gif-sur-Yvette, France

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• René Doursat,

  Affiliations Institut des Systèmes Complexes, Paris, France, BioEmergences-IBiSA, Institut de Neurobiologie Alfred Fessard, CNRS, Gif-sur-Yvette, France, School of Biomedical Engineering, Drexel University, Philadelphia, Pennsylvania, United States of America

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• Yannick L. Kergosien,

  Affiliations MDAM UPR3294, Institut de Neurobiologie Alfred Fessard, CNRS, Gif-sur-Yvette, France, BioEmergences-IBiSA, Institut de Neurobiologie Alfred Fessard, CNRS, Gif-sur-Yvette, France, LIMICS-INSERM UMR 1142, UFR SMBH, Université Paris 13, Bobigny, France

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• María J. Ledesma-Carbayo,

  Affiliations Biomedical Image Technologies, ETSIT, Universidad Politécnica de Madrid, CEIMoncloa, Madrid, Spain, Research Center in Bioengineering, Biomaterials and Nanomedicine (CIBER-BBN), Madrid, Spain

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• Paul Bourgine,

  Affiliations MDAM UPR3294, Institut de Neurobiologie Alfred Fessard, CNRS, Gif-sur-Yvette, France, Institut des Systèmes Complexes, Paris, France, BioEmergences-IBiSA, Institut de Neurobiologie Alfred Fessard, CNRS, Gif-sur-Yvette, France

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• Nadine Peyriéras ,

  Contributed equally to this work with: Nadine Peyriéras, Andrés Santos

  * E-mail: nadine.peyrieras@inaf.cnrs-gif.fr (NP); andres@die.upm.es (AS)

  Affiliations MDAM UPR3294, Institut de Neurobiologie Alfred Fessard, CNRS, Gif-sur-Yvette, France, Institut des Systèmes Complexes, Paris, France, BioEmergences-IBiSA, Institut de Neurobiologie Alfred Fessard, CNRS, Gif-sur-Yvette, France

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• Andrés Santos

  Contributed equally to this work with: Nadine Peyriéras, Andrés Santos

  * E-mail: nadine.peyrieras@inaf.cnrs-gif.fr (NP); andres@die.upm.es (AS)

  Affiliations Biomedical Image Technologies, ETSIT, Universidad Politécnica de Madrid, CEIMoncloa, Madrid, Spain, Research Center in Bioengineering, Biomaterials and Nanomedicine (CIBER-BBN), Madrid, Spain

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