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Research Article

Protein Docking by the Underestimation of Free Energy Funnels in the Space of Encounter Complexes

  • Yang Shen,

    Affiliations: BioMolecular Engineering Research Center, Department of Biomedical Engineering, Boston University, Boston, Massachusetts, United States of America, Center for Information and Systems Engineering, Boston University, Boston, Massachusetts, United States of America

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  • Ioannis Ch. Paschalidis,

    Affiliations: Center for Information and Systems Engineering, Boston University, Boston, Massachusetts, United States of America, Division of Systems Engineering, Boston University, Boston, Massachusetts, United States of America, Department of Electrical and Computer Engineering, Boston University, Boston, Massachusetts, United States of America

    X
  • Pirooz Vakili,

    Affiliations: Center for Information and Systems Engineering, Boston University, Boston, Massachusetts, United States of America, Division of Systems Engineering, Boston University, Boston, Massachusetts, United States of America, Department of Mechanical Engineering, Boston University, Boston, Massachusetts, United States of America

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  • Sandor Vajda mail

    vajda@bu.edu

    Affiliation: BioMolecular Engineering Research Center, Department of Biomedical Engineering, Boston University, Boston, Massachusetts, United States of America

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  • Published: October 10, 2008
  • DOI: 10.1371/journal.pcbi.1000191

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